Naval Research Laboratory
Ocean Dynamics and Prediction Branch

Description of the Ocean Dynamics and Prediction Branch


Publications


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2021
2020
2019
2018
2018
Allard, R.A., S.L. Farrell, D.A. Hebert, W.F. Johnston, L. Li, N.T. Kurtz, M.W. Phelps, P.G. Posey, R. Tilling, A. Ridout and A.J. Wallcraft, 2018:
Utilizing CryoSat-2 sea ice thickness to initalize a coupled ice-ocean modeling system
Advances in Space Research vol 62 doi:10.1016/j.asr.2017.12.030

Ansong, J.K., B.K. Arbic, H.L. Simmons, M.H. Alford, M.C. Buijsman, P.G. Timko, J.G. Richman, J.F. Shriver, and A.J. Wallcraft, 2018:
Geographical Distribution of Diurnal and Semidiurnal Parametric Subharmonic Instability in a Global Ocean Circurlation Model
Journal of Physical Oceanography vol 48, doi:10.1175/JPO-D-17-0164.1

Arbic, B.K., M.H. Alford, J.K. Ansong, M.C. Buijsman, E.J. Metzger, H.E. Ngodock, J.G. Richman, J.F. Shriver, I. Souopgui, A.J. Wallcraft, L. Zamudio, et. al., 2018:
A Primer on Global Internal Tide and Internal Gravity Wave Continuum Modeling in HYCOM and MITgcm
New Frontiers in Operational Oceanography Chapter 13, doi:10.17125/gov2018.ch13

Fan, Y., E. Jarosz, Z. Yu, W.E. Rogers, T.G. Jensen, J.H. Liang, 2018:
Langmuir turbulence in horizontal salinity gradient
Ocean Modelling vol 129, doi:10.1016/j.ocemod.2018.07.010

Edwards, K.L., W.E. Rogers, S. Siqueira, P. Gay, and K. Wood, 2018:
A Cost-Benefit Analysis of SWAN with Source Term Package ST6
NRL Report NRL/MR/7322--18-9755

Francis, O., G. Panteleev, M. Yaremchuk, V. Luchin, J. Stroh, P. Posey, and D. Hebert, 2018:
Observing Systems Simulation Experiments and Adjoint Sensitivity Analysis: Methods for Observational Programs in the Arctic Ocean
Arctic Institute of North America vol 71, no. 5, https://doi.org/10.14430/arctic-4603

Gemmrich, J., W.E. Rogers, J. Thomson, and S. Lehner, 2018:
Wave Evolution in Off-Ice Wind Conditions
Journal of Geophysical Research: Oceans vol 123 doi:10.1029/2018JC013793

Hwang, P.A., and Y. Fan, 2018:
Low-Frequency Mean Square Slopes and Dominant Wave Spectral Properties: Toward Tropical Cyclone Remote Sensing
IEEE Transactions on Geoscience and Remote Sensing doi:10.1109/TGRS.2018.2850969

Jacobs, G.A., C.N. Barron, C.A. Blain, M.J. Carrier, J.M. DAddezio, R.W. Helber, J.C. May, H.E. Ngodock, J.J. Osborne, M.D. Orzech, C.D. Rowley, I. Souopgui, S.R. Smith, J. Veeramony, M. Yaremchuk, 2018:
Operational Ocean Data Assimilation
New Frontiers in Operational Oceanography Chapter 18, 513-543 doi:10.17125/gov2018.ch18

Janiga, M.A., C.J. Schreck III, J.A. Ridout, M. Flatau, N.P. Barton, E.J. Metzger, and C.A. Reynolds, 2018:
Subseasonal Forecasts of Convectively Coupled Equatorial Waves and the MJO: Activity and Predictive Skill
Monthly Weather Review vol 146 doi:10.1175/MWR-D-17-0261.1

Jensen, T.G., I. Shulman, H.W. Wijesekera, S. Anderson and S. Ladner, 2018:
Submesoscale features and their interaction with fronts and internal tides in a high-resolution coupled atmosphere-ocean-wave model of the Bay of Bengal
Ocean Dynamics vol 410 doi:10.1007/s10236-018-1136x

Laurent A., K. Fennel, D.S. Ko, and J. Lehrter, 2018:
Climate Change Projected to Exacerbate Impacts of Coastal Eutrophication in the Northn Gulf of Mexico
Journal of Geophysical Research: Oceans vol 123 doi:10.1002/2017JC013583

Liu, J., J.H. Liang, J.C. McWilliams, P.P. Sullivan, Y. Fan, Q. Chen, 2018:
Effect of Planetary Rotation on Oceanic Surface Boundary Layer Turbulence
Journal of Physical Oceanography vol 48 doi:10.1175/JPO-D-17-0150.1

Meylan, M.H., L.G. Bennetts, J.E.M. Mosig, W.E. Rogers, M.J Doble, and M.A. Peter, 2018:
Dispersion Relations, Power Laws, and Energy Loss for Waves in the Marginal Ice Zone
Journal of Geophysical Research: Oceans vol 123 doi:10.1002/2018JC013776

Orzech, M.D., F. Shi, J. Veeramony, S. Bateman, J. Calantoni and J.T. Kirby, 2018:
A Coupled System for Investigating the Physics of Wave-Ice Interactions
Journal of Atmosheric and Oceanic Technology vol 35 doi:10.1175/JTECH-D-17-0189.1

Panteleev, G.G., M. Yaremchuk, C. Luchin, and O. Francis, 2018:
The Bereing Sea Regional Data Assimilation System: From Climate Variability to Short Term Hindcasting
The Ocean in Motion Chapter 32, https:doi.org/10.1007/978-3-319-71934-4_32

Rogers, W.E., 2018:
Phase-averaged wave models
NRL Multimedia Report

Rogers, W.E., M.H. Meylan, A.L. Kohout, 2018:
Frequency Distribution of Dissipation of Energy of Ocean Waves by Sea Ice Using Data from Wave Array 3 of the ONR "Sea State" Field Experiment
NRL Report NRL/MR/7322--18-9801

Rogers, W.E., M.H. Meylan, and A.L. Kohout, 2018:
Frequency distribution of energy of ocean waves by sea ice using data from Wave Array 3 of the ONR "Sea State" field experiment
NRL Multimedia Report

Rogers, W.E., P. Posey, L. Li, and R.A. Allard, 2018:
Forecasting and hindcasting waves in and near the marginal ice zone: Wave modeling and the ONR "Sea State" field experiment
NRL Report NRL/MR/7320--18-9786

Sentchev, A., M. Yaremchuk, and M. Thiebaut, 2018:
Monitoring Strong Tidal Currents in Straits and Nearshore Regions
The Ocean in Motion Chapter 33 https://doi.org/10.1007/978-3-319-71934-4_33

Sutherland, P., J. Bronzena, W.E. Rogers, M. Doble, and P. Wadhams, 2018:
Airborne Remote Sensing of Wave Propagation in the Marginal Ice Zone
Journal of Geophysical Research: Oceans vol 123 doi:10.1029/2018JC013785

Veeramony, J., S. Flampouris, M. Orzech, and H. Ngodock, 2018:
Covariance Function for Nearshore Wave Assimilation Systems
NRL Report NRL/MR/7320--18-9753

Yu, Z., Y. Fan, E.J. Metzger, and O.M. Smedstad, 2018:
The wind work input inot the global ocean revealed by a 17-year global HYbrid coordinate ocean model reanalysis
Ocean Modelling vol 130 doi:10.1016/j.ocemod.2018.07.009

2017
Allahadi, M.N., Jose, E.J. D'Sa, D.S. Ko, 2017:
Effect of wind, river discharge, and outer-shelf phenomena on circulation dynamics of the Atchafalaya Bay and shelf
Ocean Engineering vol 129 doi:10.1016/j.oceaneng.2016.10.035

Ansong, J.K., B.K. Arbick, M.H. Alford, M.C. Buijsman, J.F. Shriver, Z. Zhao, J.G. Richman, H.L. Simmons, P.G. Timko, A.J. Wallcraft, and L. Zamudio, 2017:
Semidiurnal internal tide energy fluxes and their variabiltiy in a Global Ocean Model and moored observations
Journal of Geophysical Research: Oceans: vol 122 doi:10.1002/2016JC012184

Anutaliya, A., U. Send, J.L. McClean, J. Sprintall, L. Rainville, C.M. Lee, S.U. Priyantha Jinadasa, A.J. Wallcraft and E.J. Metzger, 2017:
An undercurrent off the east coast of Sri Lanka
European Geoscience Union vol 13, doi:10.5194/os-13-1035-2017

Babanin, A.V., A. van der Weshuijsen. D. Chalikov and W.E. Rogers, 2017:
Advanced wave modeling, including wave-current interaction
Journal of Marine Research vol 75 p 239-262

Barron, C.N., C. Rowley, S.R. Smith, J. May, J.M. Dastugue, P.L. Spence, and S. Gremes-Cordero, 2017:
Impact of satellite observations on SST forecasts via variational data assimilation and heat flux calibration
Proceedings of GHRSST XVII 6-10 June 2016, Washington, DC

Barton, N., R. Allard, P. Posey, E.J. Metzger, J. Hansen, and R. Preller, 2017:
Coupling Atmosphere, Ice, and Ocean Models Improves Prediction
Future Force Winter Edition 2017

Buijsman, M.C., B.K. Arbic, J.G. Richman, J.F. Shriver, A.J. Wallcraft and L. Zamudio, 2017:
Semidiurnal internal tide incoherence in the equatorial Pacific
Journal of Geophysical Research: Oceans doi:10.1002/2016JC012590

Cambazoglu, M.K., and C.A. Blain, 2017:
Development of a Flood Risk Assesment Model for a Braided River System
Coastal Engineering Proceedings no 35 doi://10.9753/icce.v35.management.25

Castro, S., K. Willis and C.N. Barron, 2017:
Plenary Session II: Review of activities since G-XVI (part 1) session report
Proceedings of GHRSST XVII 6-10 June 2016 Washington DC

Centurioni, L.R., the NASCar team, and T.G. Jensen, 2017:
Northern Arabian Sea Circulation-Autonmouns Research (NASCar): A research initiative based on autonomous sensors
Oceanography vol 30 doi:10.5670/oceanog.2017.224

Cheng, S., W.E.Rogers, J. Thomson, M. Smith, M.J. Doble, P. Wadhams, A.L. Kohout, B. Lund, O.P.G. Persson, C.O. Collins III, S.F. Ackley, F. Montiel, and H.H. Shen, 2017:
Calibrating a Viscoelastic Sea Ice Model for Wave Propagation in the Arctic Fall Marginal Ice Zone
Journal of Geophysical Research: Oceans vol 122 doi://10.1002/2017JC013275

Collins III, C.O., B. Blomquist, O. Perssson, B. Lund, W.E. Rogers, J. Thomson, D. Wang, M. Smith, M. Doble, P. Wadhams, A. Kohout, C. Fairall, and H.C. Graber, 2017:
Doppler Correction of Wave Frequency Spectra Measured by Underway Vessels
Journal of Atmospheric and Oceanic Technology vol 34 doi:10.1175/JTECH-D-16-0138.1

Collins III, C.O. and W.E. Rogers, 2017:
A Source Term for Wave Attenuation by Sea ice in WAVEWATCH III ®: IC4
NRL Report NRL/MR/7320--17-9726

Collins, C.O., W.E. Rogers, B. Lund, 2017:
An investigation into the dispersion of ocean surface waves in sea ice
Ocean Dynamics vol 67 doi:10.1007/s10236-016-1021-4

Fan, Y., and P. Hwang, 2017:
Kinetic energy flux budget across air-sea interface
Ocean Modelling vol 120 http://dx.doi.org/10.1016/j.ocemod.2017.10.010

Francis, O.A., M. Yaremchuk, G.G. Panteleev, J. Zhang, M. Kulakov, 2017:
Anomalous circulation in the Pacific sector of the Arctic Ocean in July-December 2008
Ocean Modelling vol 117 doi:10.1016/j.ocemod.2017.06.006

Gould, R.W., B. Penta, D.S. Ko, J.C. Lehrter, L. Lowe, I. Shulman, S.D. Ladner, J.D. Hagy, 2017:
What is the Impact of Light on Ocean Primary Production and Hypoxia?
NRL Review 133-135

Hwang, P.A., and Y. Fan, 2017:
Effective Fetch and Durationof Tropical Cyclone Wind Fields Estimated from Simultaneous Wind and Wave Measurements: Surface Wave and Air-Sea Exchange Computation
Journal Of Physical Oceanography vol 47 doi:10.1175/JPO-D-16-0180.1

Hang, P.A., Y. Fan, F.J. Ocampo-Torres, and H. Garcia-Nava, 2017:
Ocean Surface Wave Spectra inside Tropical Cyclones
Journal of Physical Oceanography vol 47 doi:10.1175/JPO-D-17-0066.1

Joshi, I.D., E.J. D'Sa, C.L. Osburn, T.S. Bianchi, D.S. Ko, D. Oviedo-Vargas, A.R. Arellano, N.D. Ward, 2017:
Assessing chromophoric dissolved organic matter (CDOM) distribution, stocks, and fluxes in Apalachicola Bay using combined field, VIIRS ocean color, and model observations
Remote Sensing of Environment vol 191 doi:10.1016/j.rse.2017.01.039

Lee, C.M., J. Thomson, P. Posey, C.O. Collins III, and Marginal Ice Zone and Arctic Sea State Teams, 2017:
An Autonomous Approach to Observing the Seasonal Ice Zone in the Western Arctic
Oceanography vol 30, doi:10.5670/oceanog.2017.222

Li, L., P. Gaiser, P. Posey, R. Allard, D. Hebert, W. Meier, 2017:
Operationally Blended Satellite Data can Improve Sea Ice Forecasts
Furture Force: Winter Edition 2017

Liu, Q., A. Babanin, Y. Fan, S. Zieger, C. Guan, I-J. Moon, 2017:
Numerical simulations of ocean surface waves under hurricane conditions: Assessment of existing model performance
Ocean Modelling 118 doi:10.1016/j.ocemod.2017.08.005

Luecke, C.A., B.K. Arbic, S.L. Bassette, J.G. Richman, J.F. Shriver, M.H. Alford, O.M. Smedstad, P.G. Timko, D.S. Trossman and A.J. Wallcraft, 2017:
The Global Mesoscale Eddy Available Potential Energy Field in Models and Observations
Journal of Geophysical Research: Oceans vol 122 doi:10.1002/2017JC013136

Marks, D., P. Elmore, C.A. Blain, B. Bourgeois, F. Petry, and V. Ferrini, 2017:
A variable resolution right TIN approach for gridded oceanographic data
Computers and Geosciences vol 109 doi:10.1016/j.cageo.2017.07.008

May, J.C., C. Rowley, and C.N. Barron, 2017:
NFLUX Satellite-Based Surface Radiative Heat Fluxes. Part I: Swath-Level Products
Journal of Applied Meteorology and Climatology vol 56 doi:10.1175/JAMC-D-16-0282.1

May, J.C., C. Rowley, and C.N. Barron, 2017:
NFLUX Satelllite-Based Surface Radiative Heat Fluxes. Part II: Gridded Products
Journal of Applied Meteorology and Climatology vol 56 doi:10.1175/JAMC-D-16-0283.1

Metzger, E.J., R.W. Helber, P.J. Hogan, P.G. Posey, P.G. Thoppil, T.L. Townsend, A.J. Wallcraft, O.M. Smedstad, and D.S. Franklin, 2017:
Global Ocean Forecast System 3.1 Validation Testing
NRL Report NRL/MR/7320--17-9722

Ngodock, H., M. Carrier, J. Fabre, R. Zingarelli, and I. Souopgui, 2017:
A variational data assimilation system for the range dependent acoustic model using the representer method: Theoretical derivations
Journal of the Acoustical Society of Americavol 142 doi:10.1121.1.4989541

Ngodock, H., M. Carrier, S. Smith and I. Souopgui, 2017:
Weak and Strong Constraints Variational Data Assimilation with the NCOM-4DVAR in the Agulhas Region Using the Representer Method
Monthly Weather Review vol 145 doi:10.1175/MWR-D-16-0264.1

Nyadjro, E.S., T.G. Jensen, J.G. Richman, and J.F. Shriver, 2017:
On the Relationship Between Wind, SST, and the Thermocline in the Seychelles-Chagos Thermocline Ridge
IEEE Geoscience and Remote Sensing Letters vol 14 doi:10.1109/LGRS.2017.2762961

Pullen, J., R.A. Allard, H. Seo, A.J. Miller, S. Chen, L.P. Pezzi, T. Smith, P. Chu, J. Alves and R. Caldeira, 2017:
Coupled ocean-atmosphere forecasting at short and medium time scales
Journal of Marine Research vol 75, doi:10.1357/002224017823523991

Rapizo, H., A.V. Babanin, D. Provis, and W.E. Rogers, 2017:
Current-induced dissipation in spectral wave models
Journal of Geophysicial Research vol 122 doi:10.1002/2016JC012367

Rydbeck A.V., and T.G. Jensen, 2017:
Oceanic Impetus for Convective Onset of the Madden-Julian Oscillation in the Western Indian Ocean
Journal of Climate vol 30 doi:10.1175/JCLI-D-16-0595.1

Rydbeck, A.V., T.G. Jensen, and E.S. Nyadjiro, 2017:
Intraseasonal sea surface warming in the western Indian Ocean by oceanic equatorial Rossby waves
Geophysical Research Letters doi:10.1002/2017GL073331

Savage, A.C., B.K. Arbic, J.G. Richman, J.F. Shriver, M.H. Alford, M.C. Buijsman, J.T. Farrar, H. Shama, G. Voet, A.J. Wallcraft, and L. Zamudio, 2017:
Frequency content of sea surface height variability from internal gravity waves to mesoscale eddies
Jounal of Geophysical Research: Oceans vol 122 doi:10.1002/2016JC012331

Savage, A.C., B.K. Arbic, M.H Alford, J.K. Ansong, J.T. Farrar, D. Menemenlis, A.K. O'Rouke, J.G. Richman, J.F. Shriver, G. Voet, A.J. Wallcraft, and L. Zamudio, 2017:
Spectral decompositition of internal gravity wave sea surface height in global models
Journal of Geophysical Research: Oceans vol 122 doi:10.1002/2017JC013099

Shulman, I., M.A. Moline, S. Anderson, P. Sakalaukus, C. Rowley, S. Ladner, 2017:
A study case of bioluminescence potential dynamics in the Delaware Bay with observations and modeling
Ocean Dynamics vol 67 doi:10.1007/s10236-017-1045-4

Smith, S., H. Ngodock, M. Carrier, P. Muscarella and I. Souopgui,
Validation and Operational Implementation of the Navy Coastal Ocean Model Four Dimensional Variational Data Assimilation System (NCOM 4DVAR) in the Okinawa Trough
Data Assimilation Applications Vol. III 405-427 doi:10.1007/978-3-319-43415-5_18

Souopgui, I., H. Ngodock, M. Carrier, and S. Smith, 2017:
A comparison of two preconditioner algorithms within the representer-based four-demensional variational data assimilation system for the Navy coastal ocean model
Journal of Operational Oceanography doi:10.1080/1755876x.2017.1306376

Thomson, J., S. Ackley, H.H. Shen, and W.E. Rogers, 2017:
The Balance of Ice, Waves, and Winds in the Arctic Autumn
Earth & Space Science News Eos.org April 2017 pp 30-34

Veeramony, J., A. Condon, M. van Ormondt, 2017:
Forecasting Storm Surge and Inundation: Model Validation
Weather and Forecasting vol 32 doi:10.1175/WAF-D-17-0015.1

Yaremchuk, M., P. Martin, and C. Beattie, 2017:
A hybrid approach to generating search subspaces in dynamically constrained 4-dimensional data assimilation
Ocean Modelling vol 117 doi:10.1016/j.ocemod.2017.08.003

Yaremchuk, M., P. Martin, G. Panteleev, C. Beattie and A. Koch, 2017:
Adjoint-Free 4D Variational Data Assimilation into Regional Models
Data Assimilation Applications Vol III 83-114 doi:10.1007/978-3-319-43415-5_4

Yu. Z., E.J. Metzger, and Y. Fan, 2017:
The Impact of Ocean Surface Currents on Sverdrup Transport in the Midlatitude North Pacific via the Wind Stress Formulation
Journal of Physical Oceanography vol 47, doi:10.1175/JPO-D-16-0155.1

2016
Allard, R., P. Posey, R. Preller, E. J. Metzger and J. Crout, 2016:
Using Ice Predictions to guide submarines
FUTURE FORCE: Winter Edition vol 3

Aijaz, S., W.E. Rogers, and A.V. Babanim, 2016:
Wave spectral response to sudden changes in wind direction in finite-depth waters
Ocean Modelling vol 103 doi:10.1016/j.ocemod.2015.11.006

Blanchard-Wrigglesworth, E., A. Barthelemy, M. Chevallier, N. Fuckar, F. Massonnet, P. Posey, W. Wang, J. Zhang, C. Ardilouze, C.M. Bitz, G. Vernieres, A. Wallcraft, and M. Wang, 2016:
Multi-model seasonal forecast of Arctic sea-ice: forecast uncertainty at pan-Arctic and regional scales
Climate Dynamics doi:10.1007/s00382-016-3388-9

Brown, M.E., S.D. Arias, T. Neumann, M.F. Jasinkski, P. Posey, G. Babonis, N.F. Glenn, C. M. Birkett, VM. Escobar and T. Markus, 2016:
Applications for ICESat-2 Data
IEEE Geoscience and Remote Sensing Magazine doi:10.1109/MGRS.2016.2560759

Buijsman, M.C., J.K. Ansong, B.K. Arbic, J.G. Richman, J.F. Shriver, P.G. Timko, A.J. Wallcraft, C.B. Whalen, and Z.X. Zhao, 2016:
Impact of Parameterized Internal Wave Drag on the Semidiurnal Energy Balance in a Global Ocean Circulation Modeli
Journal of Physical Oceanography vol 46 doi:10.1175/JPO-D-15-0074.1

Carrier, M. J., H. E. Ngodock, P. Muscarella and S. Smith, 2016:
Impact of Assimilating Surface Velocity Observations on the Model Sea Surface Height Using the NCOM-4DVAR
Monthly Weather Review vol 144 doi:10.1175/MWR-D-14-00285.1

Carrier, M.J., H.E. Ngodock, S.R. Smith, I. Souopgui, and B. Bartels, 2016:
Examining the Potential Impact of SWOT Observations in an Ocean Analysis-Forecasting System
Monthly Weather Review vol 144 doi:10.1175/MWR-D-15-0361.1

Cheng,S., X. Zhao, W.E. Rogers, J. Thomson, and H.H. Shen, 2016:
Preliminary Calibration of a Rheological Sea Ice Model for Wave-In-Ice using Field Data
23rd IAHR International Symposium on Ice Ann Arbor Michigan, May 31 to June 3 2016

Collins III, C.O., W.E. Rogers, and A.Marchenko, 2016:
On Wave-Ice Interaction in the Arctic Marginal Ice Zone, and Ice Response
NRL Report NRL/MR/7320--16-9676

Collins III, C.O., W.E. Rogers, A.Marchenko and A.V. Babanin, 2016:
In situ measurements of an energetic wave event in the Arctic marginal ice zone
Geophysical Research Letters vol 42 doi:10.1002/2015GL063063

Dykes, J. D., W. E. Rogers and R. H. Preller, 2016:
Taking Wave Predictions to New Levels: WAVEWATCH III
FUTURE FORCE: Winter Edition vol 3

Fan, Y., and W.E. Rogers, 2016:
Drag coefficient comparisons between observed and model simulated directional wave spectra under hurricane conditions
Ocean Modelling vol 102 http://dx.doi.org/10.1016/j.ocemod.2016.04.004

Fan, Y., W. E. Rogers and T. G. Jensen, 2016:
Correlations between Interannual SST Oscillations and Modeled Swell Impacts on Turbulent Mixing
Journal of Climate vol 29 doi:10.1175/JCLI-D-15-0455.1

Fan, Y., Z. Yu, and F. Shi, 2016:
Are Hydrostatic Models Still Capable of Simuating Oceanic Fronts
NRL Report NRL/MR/7320--16-9704

Fennel, K., A. Laurent, R. Hetland, D. Justic, D.S. Ko, J. Lehrter, M. Murrell, L. Wang, L. Yu, and W. Zhang, 2016:
Effects of model physics on hypoxia simulations for the northn Gulf of Mexico: A model intercomparison
Journal of Geophysical Research: Oceans vol 121 doi:10.1002/2015JC011577

Franks, J.S., D.R. Johnson, and D.S. Ko, 2016:
Pelagic Sargassum in the Tropical North Atlantic
Gulf and Caribbean Research vol 27 doi:10.18785/gcr.2701.08

Gemmrich, J., J. Thomson, W.E. Rogers, A. Pleskachevsky and and S. Lehner, 2016:
Spatial characteristics of ocean surface waves
Ocean Dynamics vol 66 doi:10.1007/s10236-016-0967-6

Jensen, T.G., H.W. Wijesekera, E.S. Nyadjro, P.G. Thoppil, J.F. Shriveri, K.K. Sandeep and V. Pand, 2016:
Modeling Salinity Exchanges Between the Equatorial Indian Ocean and the Bay of Bengal
Oceanography vol 29 doi:10.5670/oceanog.2016.42

Ko, D.S., R.W. Gould Jr., B.Penta and J.C. Lehrter, 2016:
Impact of Satellite Remote Sensing Data on Simulations of Coastal Circulations and Hypoxia on the Louisiana Continental Shelf
Remote Sensing vol 8 doi:10:3390/rs8050435

Ko, D.S., S-Y Chao, C-C Wu, I-I Lin and S. Jan, 2016:
Impacts of Tides and Typhoon Fanapi (2010) on Seas Around Taiwan
Terr. Atmos. Ocean Sci vol 27(2) doi:10.3319/TAO.2015.10.28.01(Oc)

Le Dimet, F.-X., I. Souopgui, and H.E. Ngodock, 2016:
Sensitivity analysis applied to a variational data assimilation of a simulated pollution transport problem
International Journal for Numerical Methods in Fluids DOI 10.1002/fld.4274

Mariano, A.J.,E.H. Ryan, H.S. Huntley, L.C. Laurindo, E. Coelho, A. Griffa, T.M. Ozgokmen, M. Berta, D. Bogucki, S.S. Chen, M. Curic, K.L. Drouin, M. Gough, B.K. Haus, A.C. Haza, P.J. Hogan, G.A. Jacobs, M. Wei, 2016:
Statistical properties of the surface velocity field in the northern Gulf of Mexico sampled by GLAD drifters
Journal of Geophysical Research: Oceans vol 121 DOI:10.1002/2015JC011569

May, J.C., C. Rowley and N. Van de Voorde, 2016:
The Naval Research Laboratory Ocean Surface FLUX (NFLUX) System: Satellite-Based Turbulent Heat
Journal of Applied Meteorology and Climatology vol 55 doi:10.1175/JAMC-D-15-0187.1

Ngodock, H.E., I. Souopgui, A.J. Wallcraft, J.G. Richman, J.F. Shriver and B.K. Arbic, 2016:
On improving the accuracy of the M2 barotropic tides embedded in a high-relolution global ocean circulation model
Ocean Modelling vol 97 doi:10.1016/j.ocemod.2015.10.011

Orzech, M.D., F. Shi, J. Veeramony, S. Bateman, J. Calantoni and J.T. Kirby, 2016:
Incoprorating floating surface objects into a fully dispersive surface wave model
Ocean Modelling vol 102 http://dx.doi.org/10.1016/j.ocemod.2016.04.007

Orzech, M., J. Veeramony, H. Ngodock, 2016:
Recent Updates to SWANFAR, a 5DVAR Data Assimilation System for SWAN
NRL Report NRL/MR/7320--16-9705

Ozgokmen, T.M., E.P. Chassignet, C.N Dawson, D. Dukhovskiy, G.A. Jacobs, O. Garcia-Pineda, I.R. MacDondald, S.L. Morey, M.J. Olascoaga, A.C. Poje, M. Reed, J. Skancke, 2016:
Over What Area Did the Oil and Gas Spread During the 2010 Deepwater Horizon Oil Spill?
Oceanography vol 29 doi://10.5670/oceanog.2016.74

Panteleev, G., M. Yaremchuk, O. Francis, P.J. Stabeno, T. Weingartner, and J. Zhang, 2016:
An inverse modeling study of circulation in the Eastern Bering Sea during 2007-2010
Journal of Geophysical Research: Oceans vol 121 DOI:10.1002/2015JC011287

Pauer, J.J.,T.J. Feist, A.M. Anstead, P.A. DePetro, W.Melendez, J.C. Hehrter, M.C. Murrell, X. Zhang andD. S. Ko, 2016:
A modeling study examining the impact of nutrient boundaries on primary production on the Louisiana continental shelf
Ecological Modeling vol 328 doi://10.1016/j.ecolmodel.2016.02.007

Rogers, W.E., J. Thomson, H.H. Shen, M.J. Doble, P. Wadhams, and S. Cheng, 2016:
Dissipation of wind waves by pancake and frazil ice in the autumn Beaufort Sea
Journal of Geophysical Research: Oceans vol 121 7991-8007 doi:10.1002/2016JC012251

Sentchev, A. and M. Yaremchuk, 2016:
Monitoring tidal currents with a towed ADCP system
Ocean Dynamics vol 66 doi://10.1007/s10236-015-0913-z

Shen, H.H., J. Thomson, M.J. Doble, A.L. Kohout, B. Lund, W.E. Rogers, S.F. Ackley, B. Holt,and P. Wadhams, 2016:
A Field Study of Waves in Ice the Beafort/Chukchi Sea Fall 2015
23rd IAHR International Symposium on Ice Ann Arbor, Michigan, May 31 to June 3 2016

Shinoda, T., W. Han, T.G. Jensen, L. Zamudio, E.J. Metzger and R-C Lien, 2016:
Impact of the Madden-Julian Oscillation on the Indonesian Throughflow in the Makassar Strait during the CINDY/DYNAMO Field Campaign
Journal of Climate vol 29 DOI:10.1175/JCLI-D-15-0711.1

Souopgui, I., H.E. Ngodock, A. Vidard and F.-X. LeDimet, 2016:
Incremental projection approach of regularization for inverse problems
Appl Math Optim vol 74(2) DOI:10.1007/s00245-015-9315-3

Thomson, J., M.S. Schwendeman, S.F. Zippel, S. Moghimi, J. Gemmrich and W.E. Rogers, 2016:
Wave-Breaking Turbulence in the Ocean Surface Layer
Journal of Physical Oceanography vol 46 doi:10.1175/JPO-D-15-0130.1

Thomson, J., Y. Fan, S. Stammerjohn, J. Stopa, W.E. Rogers, F. Girard-Ardhuin, F. Ardhuin, H. Shen, W. Perrie, H. Shen, S. Ackley, A. Babanin, Q. Liu, P. Guest, T. Maksym, P. Wadhams, C. Fairall, O. Persson, M. Doble, H. Graber, B. Lund, V. Squire, 2016:
Emerging trends in the sea state of the Beaufort and Chukchi seas
Ocean Modelling vol 105 doi:10.1016/j.ocemod.2016.02.009

Thoppil, P. G., E. J. Metzger, H. E. Hurlburt, O. M. Smedstad and H. Ichikawa, 2016:
The current system east of the Ryukyu Islands as revealed by a global ocean reanalysis
Progress in Oceanography vol 141 doi:10.1016/j.pocean.2015.12.013

Wang, Y., B. Holt, W. E. Rogers, J. Thomson, and H. H. Shen, 2016:
Wind and wave influences on sea ice floe size and leads in the Beaufort and Chukchi Seas during the summer-fall transition 2014
Journal of Geophysical Research: Oceans doi:10,1002/2015JC011349

Wei, M., G. Jacobs, C. Rowley, C.N. Barron, P. Hogan, P. Spence, O.M. Smedstad, P. Martin, P. Muscarella and E. Coelho, 2016:
The performance of the US Navy's RELO ensemble, NCOM, HYCOM during the period of GLAD at-sea experiment in the Gulf of Mexico
Deep Sea Research II vol 129, http://dx.doi.org/10.1016/j.dsr2.2013.09.002

Wijeskera, H.W., W.J. Teague, E. Jarosz, D.W. Wang, T.G. Jensen, S.U.P. Jinadasa, H.J.S. Fernando, L.R. Centurioni, Z.R. Hallock, E.L. Shroyer, and J.N. Moum, 2016:
Observations of Currents Over the Deep Southern Bay of Bengal - With a Little Luck
Oceanography vol 29 doi://10.5670/oceanog.2016.44

Williams, J., B. Tremblay, R. Newton, and R. Allard, 2016:
Dynamic Preconditioning of the Minimum September Sea-Ice Extent
Journal of Climate vol 29 doi:10.1175/JCLI-D-15-0515.1

Yaremchuk, M., P. Martin, 2016:
Implementation of a Balance Operator in NCOM
NRL Report NRL/MR/7320--16-9649

Yaremchuk, M., P. Martin, A. Koch and C. Beattie: 2016
Comparison of the adjoint and adjoint-free 4dVar assimilation of the hydrographic and velocity observations in the Adriatic Sea
Ocean Modelling vol 97 http://dx.doi.org/10.1016/j.ocemod.2015.10.010

Yaremchuk, M., P. Spence, M. Wei and G. Jacobs, 2016:
Lagrangian predictability in the DWH region from HF radar observations and model output
Deep Sea Research II vol 129 doi:10.1016/j.dsr2.2013.05.035

Wang, Y., B. Holt, W.E. Rogers, J. Thomson, and H.H. Shen, 2016:
Wind and wave influences on sea ice floe size and leads in the Beaufort and Chukchi Seas during the summer-fall transition 2014
Journal of Geophysical Research: Oceans doi:10,1002/2015JC011349

2015
Alford, M., T. Peacock, M. Buijsman, L. Centuroni, S-Y Chao, M-H Chang, D. Farmer, O. Fringer, K-H Fu, H. Graber, S. Helfrich, S. Jachec, C. Jackson, D. S. Ko, et. all, 2015:
The Formation and Fate of Internal Waves in the South China Sea
Nature vol 521, doi:10.1038/nature14399

Ansong, J.K., B.K. Arbic, M.C. Buijsman, J.G. Richman, J.F. Shriver and A.J. Wallcraft, 2015:
Indirect evidence for substantial damping of low-mode internal tides in the open ocean
Journal of Geophysical Research: Oceans vol 120 doi:10.1002/2015JC010998

Barron, C.N., J.M. Dastugue, J. May, C. Rowley, S.R. Smith, P.L. Spence, and S. Gremes-Cordero, 2015
Forecast of SST: calibration of ocean forcing with satellite flux estimates (COFFEE)
Proceedings of GHRSST XVI, 20-24 July 2015, ESTEC, Netherlands, 196-201

Belkin, I., R. W. Helber, 2015:
Physical oceanography of fronts: An editorial
Deep Sea Research II vol 119 doi:10.1016/j.dsr2.2015.08.004

Buijsman, M. C., B. K. Arbic, J. A. M. Green, R. W. Helber, J. G. Richman, J. F. Shriver P. G. Timko, and A. Wallcraft, 2015:
Optimizing internal wave drag in a forward barotropic model with semidiurnal tides
Ocean Modelling vol 85 doi:10.1016/j.ocemod.2014.11.003

Coelho, E., P. Hogan, G. Jacobs, P. Thoppil, H. Huntley, B. K. Haus, B. Lipphardt Jr., A. Kirwan, E. Ryan, J. Olascoaga, F. Beron-Vera, A. C. Poje, A. Griffa, T. Ozgokmen, A. Mariano, G. Novelli, A. Haza, D. Bogucki, S. Chen, M. Curcic, M. Wei, 2015:
Ocean current estimation using a Multi-Model Ensemble Kalman Filter during the Grand Lagrangian Deployment experiment (GLAD)
Ocean Modelling 87 doi:10.1016/j.ocemod.2014.11.001

Collins, C. O., W. E. Rogers, A. Marchenko and A. V. Babanin, 2015:
In situ measurements of an energetic wave event in the Arctic marginal ice zone
Geophysical Research Letters vol 42, doi:10.1002/2015GL063063

Crout, J. W. and P. G. Posey, 2015:
Validation Test Report for the Arctic Cap Nowcast/Forecast System as a Fractures/Leads and Polynyas Product
NRL Report NRL/MR/7320--15-9590

Douglass, E. M., and J. G. Richman, 2015:
Analysis of ageostrophy in strong surface eddies in the Atlantic Ocean
Journal of Geophysical Research: Oceans vil 120(3) doi:10.1002/2014JC010350

Gremmrich, J., A. Pleskachevsky and E. Rogers, 2015:
Surface waves in Arctic seas, observed from TerraSAR-X
IGARSS proceedings

Hebert, D. A., R. A. Allard, E. J. Metzger,P. G. Posey, R. H. Preller, A. J. Wallcraft, M. W. Phelps and O. M. Smedstad, 2015:
Short-term sea ice forecasting: An assessment of ice concentration and ice drift forecasts using the U.S. Navy's Arctic Cap Nowcast/Forecast System
Journal of Geophysical Research: Oceans vol 120 doi:10.1002/2015JC011283

Helber, R. W., C. N. Barron, M. Toner and J. M. Dastugue, 2015:
The Acoustic parameter Climatology
U.S. Navy Journal of Underwater Acoustics vol 64(2)

Huntley, H. S., B. L. Lipphardt, G. Jacobs and A. D. Kirwan Jr., 2015:
Cluster, deformation, and dilation:Diagnostics for material accumulation regions
Journal of Geophysical Research: Oceans 120, doi:10.1002/2015JC011036

Jacobs, G. A., H. S. Huntley, A. D. Kirwan Jr., B. L. Lipphard Jr. T. Campbell, T. Smith, K. Edwards and B. Bartels, 2015:
Ocean prosess underlying surface clustering
Journal of Geophysical Research: Oceans vol 120 doi://10.1002/2015JC011140

Jensen, T. G., T. Shinoda, S. Chen and M. Flatau, 2015:
Ocean Response to CINDY/DYNAMO MJOs in Air-Sea-Coupled COAMPS
Journal of Meteorological Society of Japan vol 93A doi:10.2151/jmsj.2015-049

Jones, B. T., J. Gyory, E. K. Grey, M. Bartlein, D. S. Ko, R. W. Nero, and C. M. Taylor, 2015:
Transport of blue crab larvae in the northern Gulf of Mexico during the Deepwater Hoarizon oil spill
Marine Ecology Progress Series vol 527 doi:10.3354/meps11238

Martin, P. J., K. L. Edwards, D. Hebert and R. A. Allard, 2015:
Implementation of Wetting and Drying in NCOM: Description and Validation Test Report
NRL Report 7320--14-9573

Metzger, E. J., P. G. Posey, P. G. Thoppil, T. L. Townsend and A. J. Wallcraft, 2015:
Validation Test Report for the Arctic Cap Nowcast/Forecast System as a Fractures/Leads and Polynyas Product
NRL Report NRL/MR/7320--15-9579

Muller, M., B. K. Arbic, J. G. Richman, J. F. Shriver, E. L. Kunze, R. B. Scott, A. J. Wallcraft and L. Zamudio, 2015:
Toward an internal gravity wave spectrum in global ocean models
Geophysical Research Letters vol 42, doi:10.1002/2015GL063365

Muscarella, P., M. J. Carrier, H. Ngodock, S. Smith, B. L. Lipphardt Jr., A. D. Kirwan Jr. and H. S. Huntley, 2015:
Do Assimilated Drifter Velocities Improve Lagrangian Predictability in an Operational Ocean Model?
Monthly Weather Review vol 143 doi:10.1175/MWR-D-14-00164.1

Ngodock, H., P. Muscarella, M. Carrier, I. Souopgui, and S. Smith, 2015:
Assimilation of HF Radar Observations in the Chesapeake-Delaware Bay Region Using the Navy Coastal Ocean Model (NCOM) and the Four-Dimensional Variational (4DVAR) Method
Coastal Ocean Observing Systems Chapter 20 doi:10.1016/B978-0-12-802022-7.00020-1

Panteleev, G., M. Yaremchuk, and E. Rogers, 2015:
Adjoint-Free Variational Data Assimilation into a Regiional Wave Model
Journal of Atmosheric and Oceanic Technology vol 32 doi:10.1175/JTECH-D-14-00174.1

Panteleev, G., M. Yaremchuk, J. Stroh, P. Posey, D. Hebert, D. Nechaev, 2015:
Optimization of the High-Frequency Radar Sites in the Bering Strait Region
Journal of Atsmosheric and Oceanic Technology vol 32 doi:10.1175/JTECH-D-14-00071.1

Pickering, A. M., A. J. Nash, L. Rainville, M. Buijsman, D. S. Ko, and B. Lim, 2015:
Structure and Variability of Internal Tides in Luzon Strait
Journal of Physical Oceanography vol 45, doi:10.1175/JPO-D-14-0250.1

Posey. P. G., E. J. Metzger, A. J. Wallcraft, D. A. Hebert, R. A. Allard, O. M. Smedstad, M. W. Phelps, F. Fetter, J. S. Steward, W. N. Meier, and S. R. Helfrich, 2015:
Improving Arctic sea ice edge forecasts by assimilation high horizontal resolution sea ice concentration data into the US Navy's ice forecast systems
The Cryosphere vol 9 1735-1745

Rowley, C., C. N. Barron, G. A. Jacobs and J. May, 2015:
Ocean Surface Structure Assimilation at NRL
JCSDA Quarterly vol 51 1-4

Schiller, A., P. R. Oke, N. Ferry, E. J. Metzger and L. Parent, 2015:
Ocean Reanalyses in the context of GODAE OceanView
CLIVAR Exchanges no 67, vol 19

Shulman, I., B. Penta, J. Richman, G. Jacobs, S. Anderson and P. Sakalaukus. 2015:
Impact of submesoscale processes on dynamics of phytoplankton filaments
Journal of Geophysical Research: Oceans vol 120 doi:10.1002/2014/JC010326

Smedstad, L. F., C. N. Barron, R. N. Bourg, M. W. Brooking, D. A. Bryant, R. J. Carr, K. D. Heaney, E. A. Holmberg, A. C. Mask and B. L. Mensi, 2015:
An expansion of Glider Observation Strategies to systematically transmit and analyze preferred waypoints of underwater gliders
Proceedings of SPIE vol. 9459 Ocean Sensing & Monitoring, 94590J doi:10.1117/12.2176560

Smith, S., M. Carrier, H. Ngodock, J. Shriver, P. Muscarella, H. Penta, S. Carroll, 2015:
Validation Test Report for the Navy Coastal Ocean Model Four-Dimensional Variational Assimilation (NCOM 4DVAR) System Version 1.0
NRL Report NRL/MR/7320--15-9574

Townsend, T.L., C.N. Barron and R.W. Helber, 2016:
Ocean Preditcion with Improved Synthetic Ocean Profiles (ISOP)
NRL Review 105-112

Van de Voorde, J. May, C. Rowley, 2015:
NFLUX PRE: Validation of New Specific Humidity, Surface Air Temperature, and Wind Speed Algorithms for Ascending/Decending Directions and Clear or Cloudy Conditions
NRL Report NRL/MR/7320--15-9611

Warn-Varnas, A., D. S. Ko and A. Gangopadhyay, 2015:
Signatures of tidal interference patterns in the `South China Sea
The Oceanographic Society of Japan vol 71, doi:10.1007/s10872-015-0282-8

Wei, M., G. Jacobs, C. Rowley, C. N. Barron, P. Hogan, P. Spence, O. M. Smedstad, P. Martin, P. Muscarella and E. Coelho, 2015:
The performance of the US Navy's RELO ensemble, NCOM, HYCOM during the period of GLAD at-sea experiment in the Gulf of Mexico
Deep Sea Research II http://dx.doi.org/10.1016/j.dsr2.2013.09.002

Wijesekera, H. W., T. G. Jensen, E. Jarosz, W. J. Teague, E. J. Metzger, D. W. Wang, S. U. P. Jinadasa, K. Arulananthan, L. R. Centurioni and H. J. S. Fernado, 2015:
Southern Bay of Bengal currents and salinity intrusions during the northeast monsoon
Journal of Geophysical Research: Oceans vol 120 doi:10.1002/2015JC010744

Yaremchuk, M., and E. F. Coelho, 2015:
Filtering Drifter Trajectories Sampled at Submesoscale Resolution
IEEE Journal of Oceanic Engineering vol 40 doi:10.1109/JOE.2014.2353472

Yaremchuk, M., P. Spence, M. Wei and G. Jacobs, 2015:
Lagrangian predictability in the DWH region from HF radar observations and model output
Deep Sea Research II http://dx.doi.org/doi:10.1016/j.dsr2.2013.05.035

Yu, Z., E. J. Metzger, P. Thoppil, H. E. Hurlburt, L. Zamudio, O. M. Smedstad, H Na, H. Nakamura and J-H Park, 2015:
Seasonal cycle of volume transport through Kerama Gap revealed by a 20-year global HYbrid Coordinate Ocean Model reanalysis
Ocean Modelling vol 96 http://dx.doi.org/10.1016/j.ocemod.2015.10.012

Zaron, E. D., P. J. Fitzpatrick, S. L. Cross, J. Harding, F. L. Bub, J. D. Wiggert, D. S. Ko, Y. Lau, K. Woodard and C. N. K. Mooers, 2015:
Initial Evaluations of a U.S. Navy Rapidly Relocatable Gulf of Mexico/Caribbean Ocean Forecast System in the Context of the Deepwater Horizon Incident
NRL Report NRL/MR/7320--15-9580

Ziegler, S., A. V. Babanin, W. E. Rogers and I. R. Young, 2015:
Observation-based source terms in the third-generation wave model WAVEWATCH
Ocean Modelling vol 96 doi:10.1016/j.ocemod.2015.07.014

2014
Allard, R., E. Rogers, P. Martin, T. Jensen, P. Chu, T. Campbell, J. Dykes, T. Smith, J. Choi and U. Gravois, 2014:
The US Navy Coupled Ocean-Wave Prediction System
Oceanography vol 27 3, doi:10.5670/oceanog.2014.71

Arbic, B. K., M. Muller, J. G. Richman, J. F. Shriver, A. J. Morten, R. B. Scott, G. Serazin and T. Penduff, 2014:
Geostrophic Turbulence in the Frequency-Wavenumber Domain: Eddy-Driven Low-Frequency Variability
Journal of Physical Oceanography vol 44, doi:10.1175/JPO-D-13-054.1

Babanin, A. V. and W. E. Rogers, 2014:
Generation and limiters of rogue waves
International Journal of Ocean and Climate Systems vol 5 (2)

Barron, C. N., P. L. Spence and J. M. Dastugue, 2014:
Time Series of SST Anomalies off Western Africa
GHRST XV Proceedings 2-6 June 2014, Cape Town, SA

Bub, F. L., A. C. Mask,K. R. Wood, D. G. Krynen, B. N. Lunde, C. J. Dehaan, E. J. Metzger, P. G. Posey and J. A. Wallmark, 2014:
The Navy's Application of Ocean Forecasting to Decision Support
Oceanography vol 27 3, doi:10.5670/oceanog.2014.74

Burnett, W., S. Harper, R. Preller, G. Jacobs and K. LaCroix, 2014:
Overview of Operational Ocean Forecasting in the US Navy: Past, Present and Future
Oceanography vol 27 3, doi:10.5670/oceanog.2014.65

Carrier, M. J., H. Ngodock, S. Smith, G. A. Jacobs, P. Muscarella, T. Ozgokmen, B. Haus and B. Lipphard, 2014:
Impact of Assimilating Ocean Velocity Observations Inferred from Lagrangian Drifter Data Using the NCOM-4DVAR
Monthly Weather Review vol 142 doi:10.1175/MWR-D-13-00236.1

Cummings, J. A. and J. Peak, 2014:
Validation Test Report for the Variational Assimilation of Satellite Sea Surface Temperature Radiances
NRL Report NRL/MR/7320--14-9520

Cummings, J. A. and O. M. Smedstad, 2014:
Ocean Data Impacts in Global HYCOM
Journal of Atmospheric and Oceanic Technology vol 31 doi:10.1175/JTECH-D-14-00011.1

Holman, R. A., D. M. Lalejini, K. Edwards and J. Veeramony, 2014:
A parametric model for barred equilibrium beach profiles
Coastal Engineering vol 90 http://dx.doi.org/10.1016/j.coastaleng.2014.03.005

Hunke, E. C., D. A. Hebert, and O. Lecomte, 2014:
Level-ice melt ponds in the Los Alamos sea ice model, CICE
Ocean Modeling vol 71 doi:10.1016/j.ocemod.2012.11.008

Jacobs, G. A., B. P. Bartels, D. Bogucki, F. J. Beron-Vera, S. Chen, E. Coelho, M. Curcic, A. Griffa, M. Gough, B. K. Haus, A. Haza, R. W. Helber, P. J. Hogan, G. Huntley, H. E. Ngodock, C. D. Rowley, S. R. Smith, P. L. Spence, P. G. Thoppil and M. Wei, 2014:
Data assimilation considerations for improved ocean predictabilty during the Gulf of Mexico Grand Lagrangian Deployment (GLAD)
Ocean Modelling vol 83 doi:10.1016/j.ocemod.2014.09.003

Jacobs, G. A., J. G. Richman, J. D. Doyle, P. L. Spence, B. P. Bartles, C. N. Barron, R. W. Helber and F. L. Bub, 2014:
Simulating conditional deterministic predictability within ocean frontogenesis
Ocean Modelling vol 78 http://dx.doi.org/10.1016/j.ocemod.2014.02.004

Jolliff, J. K., and T. A. Smith, 2014:
Biological modulation of upper ocean physics: Simulating the biothermal feedback effect in Monterey Bay, California
Journal of Geophysical Research: Biogeosciences vol 19 doi:10/1002/2013JG002522

Jolliff, J. K., T. A. Smith, S. Ladner and R. A. Arnone, 2014:
Simulating surface oil transport during the Deepwater Horizon oil spill: Experiments with the BioCast system
Ocean Modelling vol 75 http://dx.doi.org/10.1016/j.ocemod.2014.01.004

Keen, T. R. and J. D. Dykes, 2014:
Geospatial Analysis and Model Evaluation Software (GAMES): Integrated Web-Based Analysis and Visualization
NRL Report NRL/MR/7320--14-9502

Ko, D. S., S. Y. Chao, C. C. Wu and I. I. Lin, 2014:
Impacts of Typhoon Megi (2010) on the South China Sea
Journal of Geophysical Research: Oceans vol 119, doi:10.1002/2013JC009785

May, J., N. Van de Voorde and C. Rowley, 2014:
Validation Test Report for the NRL Ocean Flux (NFLUX) Quality Control and 3D Variational Analysis System
NRL Report NRL/MR/7320--14-9524

Metzger, E. J., J. D. Dykes, A. J. Wallcraft, L. F. Smedstad, B. C. Ruston, T. R. Whitcomb, S. Chen and J. Chen, 2014:
Operational Implementation Design for the Earth System Prediction Capability (ESPC): A First Look
NRL Report NRL/MR/7320-14-9498

Metzger, E. J., O. M. Smedstad, P. G. Thoppil, H. E. Hurlburt, J. A. Cummings, A. J. Wallcraft, L. Zamudio, D. S. Franklin, P. G. Posey M. W. Phelps, P. J. Hogan, F. L. Bub and C. J. Dehaan, 2014:
US Navy Operational Global Ocean and Arctic Ice Prediction Systems
Oceanography vol 27, 3, doi:10.5670/oceanog.2014.66

Muscrella, P. A., M. J. Carrier and H. E. Ngodock, 2014
An examination of a multi-scale three-dimensional variational data assimilation scheme in the Kuroshio Extension using the naval coastal model
Continental Shelf Research vol 73, http://dx.doi.org/10.1016/j.csr.2013.11.009

Ngodock, H., and M. Carrier, 2014:
A 4DVAR System for the Navy Coastal Ocean Model. Part 1: System Description and Assimilation of Synthetic Observations in Monterey Bay
Monthly Weather Review vol 142, doi:10.1175/MWR-D-13-00221.1

Ngodock, H., and M. Carrier, 2014:
A 4DVAR System for the Navy Coastal Ocean Model. Part II: Strong and Weak Constraint Assimilation Experiments with Real Observations in Monterey Bay
Monthly Weather Review vol 142 doi:10.1175/MWR-D-13-00220.1

Orzech, M., J. Veeramony and S. Flampouris, 2014:
Optimizing spectral wave estimates with adjoint-based sensitivity maps
Ocean Dynamics doi:10.1007/s10236-014-0700-2

Rogers, W. E., J. D. Dykes, and P. A. Wittmann, 2014:
US Navy Global and Regional Wave Modelling
Oceanography vol 27 doi:10.5670/oceanog.2014.68

Rogers, W. E. and S. Zieger, 2014:
New wave-ice interaction physics in WAVEWATCH III
22nd IAHR International Symposium on Ice Singapore, Aug 11-15 2014

Rowley, C. and A. Mask, 2014:
Regional and Coastal Prediction with the Relocatable Ocean Nowcast/Forecast System
Oceanography vol 27 3, doi:10.5670/oceanog.2014.67

Shriver, J. F., J. G. Richman and B. K. Arbic, 2014:
How stationary are the internal tides in a high-resolution global ocean circulation model?
Journal of Geophysical Research: Oceans vol 119, 2769-2787, doi:10.1002/2013JC009423

Smedstad, L. F., C. N. Barron, K. D. Heaney, G. Peggion and E. M. Coelho, 2014:
Maximizing Effectiveness of Autonomous Underwater Vehicles
NRL Review 2013 127-129

Stammer, D., R. D. Ray, O. B. Andersen, B. K. Arbic, W. Bosch, L. Carrere, Y. Cheng, D. S. Chinn, B. D. Dushaw, G. D. Egbert, S. Y. Erofeeva, H. S. Fok, J. A. M. Green, S. Griffiths, J. G. Richman, J. F. Shriver, C. K. Shum, E. Taguchi and Y. Yi, 2014:
Accuracy assesment of global barotropic ocean tide models
AGU Publications Review of Geophysics vol 52, 243-282 doi:10.1002/2014RG000450

Thomson, J. and W. E. Rogers, 2014:
Swell and sea in the emerging Arctic Ocean
Geophysical Research Letters vol 41 doi:10.1002/2014GL059983

Van de Voorde, N., J. May, and C. Rowley, 2014:
Validation Test Report for NFLUX PRE: Validation of Specific Humidity, Surface Air Temperature and Wind Speed Precision and Accuracy for assimilation into Global and Regional Models
NRL Report NRL/MR/7320--14-9523

Veeramony, J., M. D. Orzech, K. L. Edwards, M. Gilligan, J. Choi, E. Terrill and T. DePaolo, 2014:
Navy Nearshore Ocean Prediction Systems
Oceanography vol 27 3, doi:10.5670/oceanog.2014.70

Wei, M., C. Rowley, P. Martin, C. N. Barron and G. A. Jacobs, 2014:
The US Navy's RELO ensemble prediction system and its performance in the Gulf of Mexico
Quarterly Journal of the Royal Meteorological Society vol 140 doi:10.1002/qj.2199

Xu, X, E. P. Chsssignet, W. E. Johns, W. J. Schmitz Jr. and E. J. Metzger, 2014:
Intraseasonal to interannual variability of the Atlantic meridional overturning circulation from eddy-resolving simulations and observations
Journal of Geophysical Research: Oceans vol 119, doi:10.1002/2014JC009994

Yaremchuk, M., and P. Martin, 2014:
On Sensitivity Analysis within the 4DVAR AR Framework
Monthly Weather Review vol 142 doi:10.1175/MWR-D-13-00123.1


2013
Arbic, B. K., K. L. Polzin, R. B. Scott, J. G. Richman, and J. F. Shriver, 2013:
On Eddy Viscosity, Energy Cascades, and the Horizontal Resolution of Gridded Satellite Altimeter Products
Journal of Physical Oceanography vol 43, doi:10.1175/JPO-D-11-0240.1

Cummings, J., and O. M. Smedstad, 2013:
Variational Data Assimilation for the Global Ocean
Data Assimilation for Atmospheric, Oceanic and Hydrologic Applications vol II, chapter 13

Dykes, J. D., and W. E. Rogers, 2013:
WAVEWATCH III Transition to Naval Operations
NRL Review 2013 129-132

Helber, R. W., T. L. Townsend, C. N. Barron, J. M. Dastugue and M. R. Carnes, 2013:
Validation Test Report for the Improved Synthetic Ocean Profile (ISOP) System, Part 1: Synthetic Profile Methods and Algorithm
NRL Report NRL/MR/7320--13-9364

Knaff, J. A., M. Demaria, C. R. Sampson, J. E. Peak, J. Cummings, and W. H. Schubert, 2013:
Upper Oceanic Energy Response to Tropical Cyclone Passage
Journal of Climate vol 26 doi:10.1175/JCLI-D-12-00038.1

Martin, P. J., P. J. Hogan and J. G. Richman, 2013:
Comparison of 1-D and 3-D Simulations of Upper-Ocean Structure Observed at the Hawaii Ocean Time Series Mooring
NRL Report NRL/MR/7320--13-9443

Metzger, E. J., A. J. Wallcraft, P. G. Posey, O. M. Smedstad and D. S. Franklin, 2013:
The Switch over from NOGAPS to NAVGEM 1.1 Atmospheric Forcing in GOFS and ACNFS
NRL Report NRL/MR/7320--13-9486

Ngodock, H. and M. Carrier, 2013:
A Weak Constraint 4D-Var Assimilation System for the Navy Coastal Ocean Model Using the Representer Method
Data Assimilation for Atmospheric, Oceanic and Hydrologic Applications vol II chapter 15

Orzech, M. D., J. Veeramony and H. Ngodock, 2013:
A Variational Assimilation System for Nearshore Wave Modeling
Journal of Atmospheric and Oceanic Technology vol. 30, doi:10.1175/JTECH-D-12-00097.1

Panteleev, G., M. Yaremchuk, O. Francis, and T. Kikuchi, 2013:
Configuring high frequency radar observations in the Southern Chukchi Sea
Polar Science vol 7 72-81

Rogers, W. E., and G. Vledder, 2013:
Frequency width in predictions of windsea spectra and the role of the nonlinear solver
Ocean Modelling http://dx.doi.org/10.1016/j.ocemod.2012.11.010

Rogers, W. E. and M. D. Orzech, 2013:
Implementation and Testing of Ice and Mud Source Functions in WAVEWATCH III ®
NRL Report NRL/MR/7320--13-9462

Sanabia, E. R., B. S. Barrrett, P. G. Black, S. Chen, and J. A. Cummings, 2013:
Real-Time Upper-Ocean Temperature Observations from Aircraft during Operational Hurricane Reconnaissance Missions: AXBT Demonstration Project Year One Results
Weather and Forecasting vol 28 doi:10.1175/WAF-D-12-00107.1

Sentchev, A., P. Forget, Y. Barbin and M. Yaremchuk, 2013:
Surface circulation in the Iroise Sea (W. Brittany) from high resolution HF radar mapping
Journal of Marine Systems doi:10.1016/j.jmarsys.2011.11.024

Shinoda, T., T. G. Jensen, M. Flatau and S. Chen, 2013:
Surface Wind and Upper-Ocean Variability Associated with the Madden-Julian Oscillation Simulated by the Coupled Ocean-Atmosphere Mesoscale Prediction System (COAMPS)
Monthly Weather Review vol 141 doi:10.1175/MWR-D-12-00273.1

Shinoda, T., T. G. Jensen, M. Flatau, S. Chen, W. Han, and C. Wang, 2013:
Large-Scale Oceanic Variability Associated with the Madden-Julian Oscillation during the CINDY/DYNAMO Field Campaign from Satellite Observations
Remote Sensing vol 5, 2072-2092, doi:10.3390/rs5052072

Shulman, I, S. R. Ramp, S. Anderson, E. J. Metzger and P. Sakalaukus, 2013:
Impact of remote forcing, model resolution and bathymetry on predictions of currents on the shelf
Dynamics of Atmospheres and Oceans vol 61-62 http://dx.doi.org/10.1016/j.dynatmoce.2013.03.001

Smith, T. A., S. Chen, T. Campbell, P. Martin, W. E. Rogers, S. Gabersek, D. Wang, S. Carroll, and R. Allard, 2013:
Ocean–wave coupled modeling in COAMPS-TC: A study of Hurricane Ivan (2004)
Ocean Modelling vol 69 http://dx.doi.org/10.1016/j.ocemod.2013.06.003

Thomson, J., E. A. Asaro, M. F. Cronin, W. E. Rogers, R. R. Harcourt, and A. Shcherbina, 2013:
Waves and the equilibrium range at Ocean Weather Station P
Journal of Geophysical Research vol 118, 5951-5962 doi:19.1002/2913/2013JC008837

Trossman, D. S., B. K. Arbic, S. T. Garner, J. A. Goff, S. R. Jayne, E. J. Metzger and A. J. Wallcraft, 2013:
Impact of parameterized lee wave drag on the energy budget of an eddying global ocean model
Ocean Modelling vol 72 http:dx.doi.org/10.1016/j.ocemod.2013.08.006

Wei, M., G. A. Jacobs, C. Rowley, C. N. Barron, P. Hogan, P. Spence, O. M. Smedstad, P. Martin, P. Muscarella and E. Coelho,, 2013:
The impact of initial spread calibration on the RELO ensemble and its application to Lagrangian dynamicsBR> Nonlinear Processes in Geophysics vol 20, 621-641, doi:10.5194/npg-20-621-2013

Wijeskera, H. W., D. W. Wang, W. J. Teague, E. Jarosz, W. E. Rogers, D. B. Fribance and J. N. Moum, 2013:
Surface Wave Effects on High-Frequency Currents over a Shelf Edge Bank
Journal of Physical Oceanography vol 42 doi:10.1175/JPO-D-12-0197.1

Yaremchuk, M., and A. Sentchev, 2013:
Interpolation of the Radial Velocity Data from Coastal HF Radars
Radar Systems Chapter 4

Yaremchuk, M., and D. Nechaev, 2013:
Covariance Localization with the Diffusion-Based Correlation Models
Monthly Weather Review vol 141 doi:10.1175/MWR-D-12-00273.1

Yaremchuk, M., M. Carrier, S. Smith and G. Jacobs, 2013:
Background error correlation modeling with diffusion operators
Data Assimilation for Atmospheric, Oceanic and Hydrolgical Applications chapter 8 177-203

Xu, X., H. E. Hurlburt, W. J. Schmitz, R. Zantopp, J. Ficher, and P. J. Hogan, 2013:
On the currents and transports connected with the atlantic meridional overturing circulation in the subpolar North Atlantic
Journal of Geophysical Research vol 118, doi:10.1002/jgrc,20065



2012
Allard, R. A., T. A. Smith, T. G. Jensen, P. Y. Chu, E. Rogers, T. J. Campbell, U. M. Gravois, S. N. Carroll and K. Watson, 2012:
Validation Test Report for the Coupled Ocean/Atmosphere Mesoscale Prediction System (COAMPS) Version 5.0: Ocean/Wave Component Validation
NRL Report NRL/MR/7320--12-9423

Arbic, B. K., R. B. Scott, D. B. Chelton, J. G. Richman and J. F. Shriver, 2012:
Effects of stencil width on surface ocean geostrophic velocity and vorticity estimation from gridded satellite altimeter data
Journal of Geophysical Research vol 117, C03029, doi:10.1029/2011JC007367

Arbic, B. K., J. G. Richman, J. F. Shriver, P. G. Timko, E. J. Metzger and A. J. Wallcraft, 2012:
Global Modeling of Internal Tides Within an Eddying Ocean General Circulation Model
Oceanography vol 25, 20-29 doi:http://dx.doi.org/10.5670/oceanog.2012.38

Arbic, B. K., R. B. Scott, G. R. Flierl, A. J. Morten, J. G. Richman and J. F. Shriver, 2012:
Nonlinear Cascades of Surface Oceanic Geostrophic Kinetic Energy in the Frequency Domain
Journal of Physical Oceanography vol 42 doi:10.1175/JPO-D-11-0151.1

Blain, C. A., M. K. Cambazoglu, R. S. Linzell, K. M. Dresback and R. L. Lolar, 2012:
The predictability of near-coastal currents using a baroclinic unstructedred grid model
Ocean Dynamics vol 62 doi:10.1007/s10236-011-0501-9

Chu, P. Y., G. A. Jacobs, M. K. Cambazoglu and R. S. Linzell, 2013:
Multi-Model Validation of Currents in the Chesapeake Bay Region in June 2010
Marine Geodesy vol 35 doi:10.1080/01490419.2012.709477

Condon, A., and J. Veeramony, 2012:
Development and Validation of a Coastal ASurge and Inundation Prediction System
IEEE Procedings Oceans 2012 Fall Meeting

Dash, P., A. Ignatov, M. Martin, C. Donlon, B. Brasnett, R. W. Reynolds, V. Banzon, H. Beggs, J-F Cayula, Y. Chao, R. Grumbine, E. Maturi, A. Harris, J. Mittaz, J. Sapper, T. M. Chin, J. Vazquez-Cuervo, E. M. Armstrong, C. Gentemann, and J. Cummings, 2012:
Group for High Resolution Sea Surface Temperature (GHRSST) analysis fields inter-comparisions-Part 2: Near real time web-based level 4 SST Quality Monitor (L4-SQUAM)
Deep Sea Research II vol 77-80 doi:10.1016/j.dsr2.2012.04.002

Doyle, J. D., Y. Jin, R. M. Hodur, S. Chen, J. Jin, J. Moskaitis, A. Reinecke, P. Black, J. Cummings, E. Hendricks, T. Holt, C-S Liou, M. Peng, C. Reynolds, K. Sasheggi, J. Schmidt and S. Wang, 2012:
Real-Time Tropical Cyclone, Prediction Using COAMPS-TC
Advances in Geosciences vol 28 Atmospheric Science and Ocean Sciences 15-28

Dykes and P. Fanguy, 2012:
ASW Reach-back Cell Oceanography Analysis System (ARCOAS) version 3 Users's Guide
NRL Report NRL/MR/7320--12-9356

Edwards, K., T. Nguyen and D. Sitton, 2012:
Generating Delft3D Boundary Conditions Using the Navy Coastal Ocean Model
NRL Reports NRL/MR/7329--12-9448

Gravois, U. M., W. E. Rogers and T. G. Jensen, 2012:
A Coupled Model System for Southeast Florida: Wave Model Validation Using Radar and In Situ Observations
NRL Review NRL/MR/7320--12-9355

Heaney, K. D., R. L. Campbell, R. H. Stroop, L. F. Smedstad and G. Peggion, 2012:
Environmental Measurements Path Planner (EMPath) User's Manual
NRL Report NRL/MR/7320--12-9359

Helber, R. W., A. B. Kara, J. G. Richman, M. R. Carnes, C. N. Barron, H. E. Hurlburt and T. Boyer. 2012:
Temperature versus salinity gradients below the ocean mixed layer
Journal of Geophysical Research vol 117, C05006, doi:10.1029/2011JC007382

Gordon, A. L., B. A. Huber, E. J. Metzger, R. D. Susanto, H. E. Hurlburt, T. R. Adi, 2012:
South China Sea throughflow impact on the Indonesian throughflow
Geophysical Research Letters vol 39, L11602, doi:10.1029/2012GL052021

Joliff, J. K., T. A. Smith, C. N. Barron, S. DeRada, S. C. Anderson, R. W. Gould and R. A. Arnone, 2012:
The impact of coastal phytoplankton blooms on the ocean-atmosphere thermal energy exchange: Evidence from a two-way coupled numerical modelling system
Geophysical Research Letters vol 39, L24607 doi:1029/2012GL053634

Jordan, P. M., G. V. Norton, S. A. Chin-Bing and A. Warn-Varnas, 2012:
On the propagation of nonlinear acoustic waves in viscous and thermoviscois fluids
European Journal of Mechanics B/Fluids vol 34 doi:10.1016/j.euromechflu.2012.01.016

Joseph, S., A. J. Wallcraft, T. G. Jensen, M. Ravichandran, S. S. C. Shenoi and S. Nayak, 2012:
Weakening of spring Wyrtki jets in the Indian Ocean during 2006-2011
Journal of Geophysical Researchvol 117, C04012 doi:10.1029/2011JC007581

Keen, T. R., R. L. Slingerland, S. J. Bentley, Y. Furukawa, W. J. Teague, and J. D. Dykes, 2012:
Sediment transport on continental shelves: storm bed formation and preservation inheterogeneous sediments
Int. Assoc. Sedimentol vol 44 295-310

Martin, P. J., E. Rogers, R. A. Allard, P. J. Hogan and J. G. Richman, 2012:
Results from Tests of Direct Wave Mixing in the Ocean's Surface Mixed Layer
NRL Report NRL/FR/7320--12-10216

Martin, M., P. Dash, A. Ignatov, V. Banzon, H. Beggs, B. Brasnett, J-F Cayula, J. Cummings, C. Donlon, C.Gentemann, R. Grumbine, S. Ishizaki, E. Maturi, R. W. Reynolds and J. Roberts-Jones, 2012:
Group for High Resolution Sea Surface temperature (GHRSST) analysis fields inter-comparisons, Part 1: A GHRSST multi-product ensemble (GMPE)
Deep Sea Research II vol 77-80 doi:10.1016/j.dsr2.2012.04.013

McCarthy, S. C., R. W. Gould, J. Richman, C. Kearney and A. Lawson, 2012:
Impact of Aerosol Model Selection on Water-Leavin Radiance Retrievals from Satellite Ocean Color Imagery
Remote Sensing vol 4 doi:10.3390/rs4123638

McLay, J. G., M. K. Flatau, C. A. Reynolds, J. Cummings, T. Hogan, and P. J. Flatau, 2011:
Inclusion of sea-surface temperature variation in the U.S. Navy ensemble-transform global ensemble prediction system
Journal of Geophysical Research Vol. 117, D19120, doi:10.1029/2011JD016937

Metzger, E. J., P. G. Thoppil, G. Peggion, D. S. Franklin, and O. M. Smedstad, 2012:
Global Ocean Forecast System V3.0 Validation Test Report Addendum: Provision of Boundary Conditions to the Relocatable Navy Coastal Ocean Model (NCOM)
NRL Review NRL/MR/7320--12-9386

Nyadjro, E. S., B. Subrahmanyam, V. S. N. Murty and J. F. Shriver, 2012:
The role of salinity on the dynamics of the Arabian Sea mini warm pool
Journal of Geophysical Research vol 117 C09002, doi:10.1029/2012JC007978

Oke, P. R., G. B. Brassington, J. Cummings, M. Martin and F. Hernandez, 2012:
GODAE inter-comparisons in the Tazman and Coral Seas
Journal of Operational Oceanography vol 5 11-24

Panteleev, G., M. Yaremchuk, V. Luchin, D. Nechaev and T. Kukuchi, 2012:
Variability of the Bering Sea circulation in the period 1992-2012
J. Oceanogr. doi:10.1007/s10872-012-0113-0

Pujiana, K., A. L. Gordon, E. J. Metzger and A. L. Ffield, 2012:
The Makassar Strait pycnocline variability at 20-40 days
Dynamics of Atmospheres and Oceans doi:10.1016/j.dynatmoce.2012.01.001

Richman, J. G., B. K. Arbic, J. F. Shriver, E. J. Metzger, and A. J. Wallcraft, 2012:
Inferring dynamics from the wavenumber spectra of an eddying global ocean model with embedded tides
Journal of Geophysical Research vol 117, C12012 doi:10.1029/2012JC008364

Rogers, W.E., A.V. Babanin, D.W. Wang, 2012:
Observation-consistent input and whitecapping-dissipation in a model for wind-generated surface waves: Description and simple calculations
J. Atmos. Oceanic Tech. 29(9), 1329-1346 DOI: 10.1175/JTECH-D-11-00092.1

Rogers, W. E., J. D. Dykes, D. Wang, S. N. Carroll and K. Watson, 2012:
Validation Test Report for WAVEWATCH III
NRL Report NRL/MR/7320--12-9424

Scott, R. B., N. Ferry, M. Drevillon, C. N. Barron, N. C. Jourdain, J. M. Lellouche, E. J. Metzger, M. H. Rio and O. M. Smedstad, 2012:
Estimates of surface drifter trajectories in the equatorial Atlantic: a multi-model ensemble approach
Ocean Dynamics vol 62 1091-1109 doi:10.1007/s10236-012-0548-2

Shinoda, T., 2012:
Observation of first and second baroclinic mode Yanai waves in the ocean
Quarterly Journal of the Royal Meteorological Society 138, 1018-1024, doi:10.1002/qj.968

Shinoda, T., W. Han, E. J. Metzger and H. E. Hurlburt,2012:
Seasonal Variation of the Indonesian Throughflow in Makassar Strait
Journal of Physical Oceanography vol 42, doi:101175/JPO-D-11-0120.1

Shriver, J. F., B. K. Arbick, J. G. Richman, R. D. Ray, E. J. Metzger, A. J. Wallcraft and P. G. Timko, 2012:
An evaluation of the barotropic and internal tides in a high-resolution global ocean circulation model
Journal of Geophysical Research vol 117, C10024, doi:10.1029/2012JC008170

Small, R. J., S. Carniel, T. Campbell, J. Teixeira, and R. A. Allard, 2012:
The response of the Liguarian and Tyrrhenian Seas to a summer Mistral event: A coupled atmosphere-ocean approach
Ocean Modelling vol 48 doi:10.1016/j.ocemod.2012.02.003

Smedstad, L. F., K. D. Heaney, G. Peggion, C. N. Barron and E. Coelho, 2012:
Validation Test Report for Genetic Algorithm in the Glider Observations STrategies (GOST 1.0) Project: Sensitivity Studies
NRL Report NRL/MR/7320--12-9361

Smith, T. A., T. J. Campbell, R. A. Allard and S. N. Carroll, 2012:
User's Guide for the Coupled Ocean/Atmosphere Mesoscale Prediction System (COAMPS) Version 5.0 Rev. 2.0
NRL Report NRL/MR/7320--12-9407

Timko, P. G., B. K. Arbic, J. G. Richman, R. B. Scott, E. J. Metzger and A. J. Wallcraft, 2012:
Skill test of three-dimensional tidal currents in a global ocean model: A look at the North Atlantic
Journal of Geophysical Research vol 117, C08014, doi:10.1029/2011JC007617

Valentine, D. L. I. Mezic, N. Crnjaric-Zic, S.ivic, P. J. Hogan, V. A. Fonoberov and S. Lorie, 2012:
Dynamic autoinoculation and the microbial ecology of a deep water hydrocarbon irruption
PNAS - Science and the Deepwater Horizon Oil Spill 109, doi/10.1073/pnas.1108820109

Wei, M., M. S. F. V. DePondeca, Z. Toth and D. Parrish, 2012:
Estimation and calibration of observation impact signals using the Lanczos method in NOAA/NCEP data assimilation system
Nonlinear Processes in Geophysics vol 19 doi:10.5194/npg-19-541-2012

Xu, X., W. J. Schmitz, H. E. Hurlburt and P. J. Hogan, 2012:
Mean Atlantic meridional overturning circulation across 26.5°N from eddy-resolving simulations compared to observations
Journal of Geophysical Research vol 117, C03042 doi:10.1029/2011JC007586

Yaremchuk, M. and A. Sentchev, 2012:
Multi-scale correlation functions associated with polynomials of the diffusion operator
Quarterly Journal of the Royal Meteorological Society vol 138, 1948-1953 doi:10.1002/qj.1896

Yaremchuk, M., and M. Carrier, 2012:
On the Renormalization of the Covariance Operators
Monthly Weather Review vol 140, doi:10.1175/MWR-D-11-001.39.1

Yaremchuk, M., M. Carrier, H. Ngodock, S. Smith I. Shulman, 2012:
Forecast Skill and Computational Cost of the Correlation Models in 3DVAR Data Assimilation
Advances in Geosciences- Atmospheric Sciences and Ocean Sciences vol 28 1-13

Zheng, Y., J. L. Lin and T. Shinoda, 2012:
The equatorial Pacific cold tongue simulated by IPCC coupled GCMs: Upper ocean heat budget and feedback analysis
Journal of Geophysical Research vol 117 C05024 doi:1029/2011JC007746

Ziegeler, S. B., J. D. Dykes and J. F. Shriver, 2012:
Spatial Error Metrics for Oceanographic Model Verification
Journal of Atmospheric and Oceanic Technology vol 29 doi:10.1175/JTECH-D-11-00109.1



2011
Chang, Y., D. Hammond, A. C, Haza, P. Hogan,,H. S. Huntley, A. D. Kirwan Jr., B. L. Lipphardt Jr., V. Tailandier, A. Griffa and T. M. Ozgokmen, 2011:
Enhanced estimation of sonobuoy trajectories by velocity reconstruction with near-surface drifters
Ocean Modelling vol 36 doi:10.1016/j.ocemod.2010.11.002

Chin-Bing, S. A., P. M. Jordan and A. Warn-Varnas, 2011:
A note on the vascous, 1D shallow water equations: Traveling wave phenomena
Mechanics Research Communications vol 38 doi:10.1016/j.mechrescom.2011.05.003

Chu, P. Y., J. G. W. Kelley, G. V. Mott, A. Zhang and G. A. Lang, 2011:
Development, implementation, and skill assessment of the NOAA/NOS Great Lakes Operational Forecast System
Ocean Dynamics 61:1305-1316 doi 10.1007/s10236-011-0424-5

D'sa, E. J., M. Korobkin and D. S. Ko, 2011:
Effects of Hurricane Ike on the Louisiana-Texas coast from satellite and model data
Remote Sensing Letters vol 2 doi:10.1080/01431161.2010.489057

Dutherland, D. A., P. MacCready, N. S. Banas and L. F. Smedstad, 2011:
A Model Study of the Salish Sea Estuarine Circulation
American Meteorological Society vol 41 doi:10.1175/2011/JPO4540.1

Dykes, J. D., 2011:
Implementation of the Automated Numerical Model Performance Metrics System
NRL Report NRL/7320--11-9353

Dykes, J. D., and W. E. Rogers, 2011:
WAVEWATCH III: Transition to Naval Operations
Ocean Waves Workshop Proceedings University of New Orleans, November 17, 2011

Hansen, J., G. Jacobs, L. Hsu, J. Dykes, J. Dastugue, R. Allard, C.Barron, D. Lalejini, M. Abramson, S. Russell and R. Mittu, 2011:
Information Domination: Dynamically Coupling METOC and INTEL for Improved Guidance for Piracy Interdiction
NRL Review 109-119

Holt, T. R., J. A. Cummings, C. H. Bishop, J. D. Doyle, X. Hong, S. Chen and Y. Jin, 2011:
Development and testing of a coupled ocean-atmosphere mesoscale ensemble prediction system
Ocean Dynamics vol 61 doi:10.1007/s10236-011-0449-9

Hurlburt, H. E., E. J. Metzger, J. Sprintall, S. N. Riedlinger, R. A. Arnone, T. Shinoda, 2011:
Circulation in the Philippine Archipelago Simulated by 1/12° and 1/25° Global HYCOM and EAS NCOM
Oceanography vol 24

Hurlburt, H. E., E. J. Metzger, J. G. Richman, E. P. Chassignet, Y. Drillet, M. W. Hecht, O. LeGalloudec, J. F. Shriver, X. Xu an L. Zamudio, 2011:
Dynamical Evaluation of Ocean Models Using the Gulf Stream as an Example
Operational Oceanography in the 21st Century Chapter 21

Jai, Y., H. R. Calil, E. P. Chassignet, E. J. Metzger, J. T. Potemra, K. J. Richards and A. J. Wallcraft, 2011:
Generation of mesoscale eddies in the lee of the Hawaiian Islands
Journal of Geophysical Research vol 116, C11009, doi:10.1029/2011JC007305

Jensen, T. G., 2011:
Bifurcation of the Pacific North Equatorial Current in a wind-driven model: response to climatological winds
Ocean Dynamics 61:1329-1344 doi 10.1007/s10236-011-0427-2

Jensen, T. G., T. J. Campbell, R. A. Allard, R.J. Small and T. A. Smith, 2011:
Turbulent heat fluxes during an intense cold-air outbreak over the Kurshio Extension Region: results from a high-resolution coupled atmosphere-ocean model
Ocean Dynamics vol 61, 657-674 doi:10.1007/s10236-011-0380-0

Jensen, T G., W. E. Rogers, U. Gravois, T. Campbell and R. Allard, 2011:
Wave-current interaction in the Florida Current in a coupled atmosphere-ocean-wave model
MTS/IEEE Conference Oceans11

Lin, I., C. Hu, Y. Li, T. Fischer, G. Wong, J. Wu, C. Huang, D. Chu, D. S. Ko and J. Chen, 2011:
Fertilization Potential of Volcanic Dust in the low-nutrient low-chlorophyll western North Pacific subtropical gyre: Satellite evidence and laboratory study
Global Biogeochemical Cycles vol 25 GB1006, doi:10.1029/2009/GB003758

Martin, P. J., S. R. Smith, G. M. Dawson, P. G. Posey and E. D. Zaron, 2011:
Validation Test Report for the Tidal Open-Boundary Prediction System (TOPS)
NRL Report NRL/MR/7320--11-9296

Nyadjro, E., B. Subrahmanyam and J. Shriver, 2011:
SeasonalVariability of Salt Transport During the Indian Ocean Monsoons
Journal of Geophysical Research vol 116, C08036 doi:10.1029/2011JC006993

Pan, C., M. Yaremchuk, D. Nechaev and H. Ngodock, 2011:
Variational assimilation of glider data in Monterey Bay
Journal of Marine Research vol 69, 331-346

Panteleev, G., M. Yaremchuk, P. Stabeno, V. Luchin, D. Nechaev, T. Kikuchi, 2011:
Dynamic topography of the Bering Sea
Journal of Geophysical Research vol 116, C05017 doi:10.1029/2010JC006354

Posey, P. G., D. A. Hebert, E. J. Metzger, A. J. Wallcraft, J. A. Cummings, R. H. Preller, O. M. Smedstad and M. W. Phelps, 2011:
Real-time Data Assimilation of Satellite Derived Ice Concentration into the Arctic Cap Nowcast/Forecast System (ACNFS)
MTS/IEEE Conference Oceans'11

Reikard, G and W. E. Rogers, 2011:
Forecasting ocean waves: Comparing a physics-based model with statistical models
Coastal Engineering vol 58, 409-416 doi:10.1016/j.coastaleng.2010.12.001

Schiller, R. V., V. H. Kourrafalou, P. Hogan and N. D. Walker, 2011:
The dynamics of the Mississippi River plume: Impact of topography, wind and offshoure forcing on the fate of plume waters
Journal of Geophysical Research vol 116 C06029 doi:10.1029/2010JC006883

Shay, L. K., B. Jaimes,J. K. Brewster, P. Meyers, E. C. McCaskill, E. Uhlhorn, F. Marks, G. R.Halliwell, O. M. Smedstad and P. Hogan, 2011:
Airborne Ocean Surveys of the Loop Current Complex from NOAA WP-3D in Support of the Deepwater Horizon Oil Spill
Geophysical Monograph Series 195 131-151 doi:10.1029/2011GM001101

Shinoda, T. 2011:
Observation of first and second baroclinic mode Yanai waves in the ocean
Quarterly Journal of the Royal Meteorological Society 137, doi:10.1002/qj.968

Shinoda, T., H. E. Hurlburt and E. J. Metzger, 2011
Anomalous tropical ocean circulation associated with La Nina Modoki
Journal of Geophysical Research vol 116, C12001, doi:10.1029/2011JC007304

Small, R. J., T. Campbell, J. Teixeira, S. Carniel, T. A. Smith, J. Dykes, S. Chen and R. Allard, 2011:
Air-Sea Interaction in the Ligurian Sea: Assessment of a Coupled Ocean-Atmosphere Model Using In Situ Data from LASIE07
American Meteorological Society vol 139, doi:10.1175/2010MWR3431.1

Smith, S, J. A. Cummings, C. Rowley, P. Chu, J. Shriver and R. Helber, 2011:
Validation Test Report for the Navy Coupled Ocean Data Assimilation 3D Variational Analysis (NCODA-VAR) System, Version 3.43
NRL Report NRL/MR/7320--11-9363

Srinivasan, A., E. P. Chassignet, L. Bertino, P. Brasseur, T. M. Chin, F. Counillon, J. A. Cummings, A. J. Mariano, O. M. Smedstad and W. C. Thacker, 2011:
A comparison of sequential assimilation schemes for ocean prediction with the HYbrid Coordinate Ocean Model (HYCOM): Twin experiments with static forecast error covariances
Ocean Modelling vol 37 doi:10.1016.j.ocemod.2011.01.006

Tang, H. S. and T. Keen, 2011:
Hybrid Model Approaches to Predict Multiscale and Multiphysics Coastal Hydrodynamic and Sediment Transport Processes
Sediment Transport Chapter 4, 71-90

Thoppil, P. G., J. G. Richman and P. J. Hogan, 2011:
Energetics of a global ocean circulation model compared to observations
Geophysical Research Letters vol 38 L15607 doi:10.1029/2011GL048347

Wang, D. W., H. W. Wijesekera, W. J. Teague, W. E. Rogers and E. Jarosz, 2011:
Bubble cloud depth under a hurricane
Geophysical Research Letters vol 38, L14604 doi:10.1029/2011GL047966

Yaremchuk, M., A. Sentchv, 2011:
A combined EOF/variational approach for mapping radar-derived sea surface currents
Continental Shelf Research vol 31, doi:10.1016/j.csr.2011.01.009

Yaremchuk, M., D. Nechaev and P. Chudong, 2011:
A Hybrid Background Error Covariance Model for Assimilating Glider Data into a Coastal Ocean Model
Monthly Weather Review vol 139, doi:10.1175/2011MWR3510.1

Yaremchuk, M. and S. Smith, 2011:
Notes and Correspondence on the correlation functions associated with polynomials of the diffusion operator
Quarterly Journal of the Royal Meteorological Society vol 137, 1927-1932

Zamudio, L., E. J. Metzger and P. Hogan, 2011:
Modeling the seasonal and interannual variability of the northern Gulf of California salinity
Journal of Geophysical Research vol 116, C02017 doi:10.1029/2010JC006631

Zheng, Y., T. Shinoda, J. Lin and G. Kiladis, 2011:
Sea Surface Temperature Biases Under the Stratus Cloud Deck in the Southeast Pacific Ocean in 19 IPCC AR4 Coupled General Circulation Models
Journal of Climate vol 24 doi:10.1175/2011JCLI4172.1


2010
Allard, R. A., G. Dawson, C. Fox and S. N. Carroll, 2010:
Littoral Environmental Sensing Architecture (LESA) Report - The Current State of Sensing Capability for Naval Special Warfare METOC Support
NRL Report NRL/MR/7320--10-9214

Allard, R. A., T. J. Campbell, T. A. Smith, T. G. Jensen, J. A. Cummings, S. Chen, J. Doyle, X. Hong and R. J. Small, 2010:
Validation Test Report for the Coupled Ocean/Atmosphere Mesoscale Prediction System (COAMPS) Version 5.0
NRL Report NRL/MR/7320--10-9283

Arbic, B. K., A. J. Wallcraft and E. J. Metzger, 2010:
Concurrent simulation of the eddying general circulation and tides in a global ocean model
Ocean Modelling vol 32 175-187

Ardhuin,F., E. Rogers, A. V. Babanin, J. F. Filipot, R. Magne, A. Roland, A. van der Westhuysen, P. Queffeulou, J. M. Lefevre, L. Aouf and F. Collard, 2010:
Semiempirical Dissipation Source Functions for Ocean Waves Part I: Definition, Calibration, and Validation
Journal of Physical Oceanography vol 40 1917-1941 doi:10.1175/2010JPO4324.1

Blain, C. A., R. S. Linzell, P. Chu and C. Massey, 2010:
Validation Test Report for the ADvanced CIRCulation Model (ADCIRC) v45.11
NRL Report NRL/MR/7320--10-9205

Campbell, T. R. Allard, R. Preller, L. Smedstad and A. Wallcraft, 2010:
Integrated Modeling of the Battlespace Environment
Computing in Science & Engineering vol 12 36-45

Carnes, M., R. W. Helber, C. N. Barron and J. M. Dastugue, 2010:
Validation Test Report for GDEM4
NRL Report NRL/MR/7330--10-9271

Carnes, M., P. J. Hogan, 2010:
Validation Test Report for LAGER 1.0
NRL Report NRL/MR/7330--10-9238

Carrier, M. J. and H. E. Ngodock, 2010:
Background-error Correlation Model Based on the Implicit Solution of a Diffusion Equation
Ocean Modelling vol 35 45-53 doi:10.1016/j.ocemod.2010.06.003

Casagrande, G., A. Warn Varnass, T. Folegot and Y. Stephan, 2010:
An original method for characterizing internal waves
Ocean Modelling vol 31 doi:10.1016/j.ocemod.2009.07.007

Chang, Y. T., T. Y. Tang, S. Chao, M. Chang, D. S. Ko, Y. J. Yang, w. Liang and M. J. McPhanden, 2010:
Mooring observations and numerical modeling of thermal structures in the South China Sea
Journal of Geophysical Research vol 115, C10022 doi:10.1029/2010JC006293

Han, W., G. A. Meehl, B. Rajagopalan, J. T. Fasullo, A. Hu, J. Lin, W. G. Large, J. Wang, X. Quan, L. L. Trenary, A. Wallcraft, T. Shinoda and S. Yeager, 2010:
Patterns of Indian Ocean sea-level change in a warming climate
Nature Geoscience vol 3 546-550

Helber, R. W., J. F. Shriver, C. N. Barron and O. M. Smedstad, 2010:
Evaluating the Impact of the Number of Satellite Altimeters Used in an Assimilative Ocean Prediction System
Journal of Atmospheric and Oceanic Technology vol 27, doi:10.1175/2009JTECHO683.1

Hsu, L., K. L. Edwards and R. A. Allard, 2010:
Producing Surf Forecasting Parameters from Delft3D
NRL Report NRL/MR/7320--10-9213

Hurlburt, H. E., E. J. Metzger, J. G. Richman, E. P. Chassignet, Y. Drillet, M. W. Hecht, O. Le Galloudee, X. Xu and L. Zamudio, 2010:
Dynamical evaluation of ocean models using the Gulf Stream as an example
GODAE Summer School 11-22 January 2010, Perth Australia

Jacobs, G. A., R. Broome, R. Leben, L. Russell, D. May and C. N. Barron, 2010:
Jason-2 Validation Test Report (VTR): Validation of Sea Surface Height Anomaly Precision and Accuracy for Mesoscale Applications
NRL Reports NRL/MR/7320--10-9144

Kara, A. B., H. E. Hurlburt, C. N. Barron, A. J. Wallcraft and E. J. Metzger, 2010:
Can an atmospherically forced ocean model accurately simulate sea surface temperature during ENSO events?
Tellus 62A doi:10.1111/j.1600-0870.2009.00422.x

Kara, A. B., R. W. Helber and A. J. Wallcraft, 2010:
Evaluations of threshold and curvature mixed layer depths by various mixing schemes in the Mediterranean Sea
Ocean Modelling vol 34 166-184 doi:10.1016/j.ocemod.2010.05.006

Kara, A. B., A. J. Wallcraft, E. J. Metzger, and M. Gundus, 2010:
Impacts of freshwater on the seasonal variations of surface salinity and circulation in the Caspian Sea
Continental Shelf Research vol 30 1211-1225

Keen, T. R. and K. T. Holland, 2010:
The Coastal Dynamics of Heterogeneous Sedimentary Environments: Numerical Modeling of Nearshore Hydrodynamics and Sediment Transport
NRL Reports NRL/MR/7320--10-9242

Keen, T. R. and K. T. Holland, 2010:
The Coastal Dynamics of Heterogeneous Sedimentary Environments: Numerical Modeling of Hydrodynamics and Mass Transport in Estuaries
NRL Reports NRL/MR/7320--10-9262

Lin, J. L., T. Shinoda, T. Qian, W. Han, P. Roundy and Y. Zheng, 2010:
Intraseasonal Variation of Winter Precipitation over the Western United States Simulated by 14 IPCC AR4 Coupled GCMs
Journal of Climate vol 23 3094-3119 doi:10.1175/2009/JCLI2991.1

Metzger, E. J., H. E. Hurlburt, A. J. Wallcraft, J. F. Shriver, T. L. Townsend, O. M. Smedstad, P. G. Thoppil, D. S. Franklin and G. Peggion, 2010:
Validation Test Report for the Global Ocean Forecast System V3.0 - 1/12° HYCOM/NCODA: Phase II
NRL Reports NRL/MR/7320--10-9236

Metzger, E. J., H. E. Hurlburt, X. Xu, J. F. Shriver, A. L. Gordon, J. Sprintall, R. D. Susanto and H. M. van Aken, 2010:
Simulated and observed circulation in the Indonesian Seas: 1/12 global HYCOM and the INSTANT observations
Dynamics of Atmospheres and Oceans 275-300 doi:10.1016/j.dynatmoce.2010.04.002

Metzger, E. J., H. E. Hurlburt, A. J. Wallcraft, O. M. Smedstad, J. A. Cummings and E. P. Chassignet, 2010:
Predicting "Ocean Weather" Using the HYbrid Coordinate Ocean Model (HYCOM)
NRL Review 2009

Metzger, E. J., P. G. Thoppil, O. M. Smedstad and D. S. Franklin, 2010:
Global Ocean Forecast System V3.0 Validation Test Report Addendum: Addition of the Diurnal Cycle
NRL Report NRL/MR/7320--10-9305

Mezic, I., S. Loire, V. A. Fonoberov and P. Hogan, 2010:
A New Mixing Diagnostic and Gulf Oil Spill Movement
Science Magazine vol 330 486-489

Nyadjro, E. S., B. Subrahmanyam, V. S. N. Murty and J. F. Shriver, 2010:
Salt transport in the near-surface layer in the monsoon-influenced Indian Ocean using HYCOM
Geophysical Research Letters vol 37, L15603, doi:10.1029/2010GL044127

Posey, P. G., E. J. Metzger, A. J. Wallcraft, R. H. Preller, O. M. Smedstad, and M. W. Phelps, 2010:
Validation of the 1/12° Arctic Nowcast/Forecast System (ACNFS)
NRL Report NRL/MR/7320--10-9287

Posey, P. G., R. H. Preller, L. F. Smedstad and C. N. Barron, 2010:
A Thinning Arctic Ice Cap as Simulated by the Polar Ice Prediction Systems (PIPS): 2000-2008
NRL Review 2009

Qian, H., P. Shaw and D. S. Ko, 2010:
Generation of internal waves by barotropic tidal flow over a steep ridge
Deep-Sea Research I vol 57 1521-1531 doi:10.1016/j.dsr.2010.09.001

Shinoda, T., 2010:
Observed Dispersion Relation of Yanai Waves and 17-Day Tropical Instability Waves in the Pacific Ocean
Scientific Online Letters on the Atmosphere vol 6 17-20 doi:10.2151/sola.2010-005

Shulman, I., S. Anderson, C. Rowley, S. DeRada, J. Doyle and S. Ramp, 2010:
Comparisons of upwelling and relaxation events in the Monterey Bay area
Journal of Geophysical Research vol 115 C06016 doi:10.1029/1009/JC005483

Smedstad, L. F., C. N. Barron, T. L. Townsend, T. J. Campbell, P. J. Martin, P. G. Posey and R. C. Rhodes, 2010:
User's Manual for the Global Ocean Forecast System (GOFS) Version 2.6
NRL Reports NRL/MR/7320--09-9210

Smith, S. R., P. G. Posey, P. J. Martin, G. M. Dawson, C. Rowley and S. N. Carroll, 2010:
Software Design Description for the Tidal Open-boundary Prediction System (TOPS)
NRL Reports NRL/MR/7320--10-9209

Smith, T. A., T. J. Campbell, R. A. Allard and S. N. Carroll, 2010:
User's Guide for the Coupled Ocean/Atmospheric Mesoscale Prediction System (COAMPS) Version 5.0
NRL Report NRL/MR/7320--10-9208

Thoppil, P. G. and P. J. Hogan, 2010:
A Modeling Study of Circulation and Eddies in the Persian Gulf
Journal of Physical Oceanography vol 40 doi:10.1175/2010JPO4227.1

Thoppil, P. G. and P. J. Hogan, 2010:
Persian Gulf response to a wintertime shamal wind event
Deep Sea Research I, vol 57 946-955, doi:10.1016/j.dsr.2010.03.003

Veeramony, J., D. Walker and L. Hsu, 2010:
A variational data assimilation system for nearshore applications of SWAN
Ocean Modelling vol 35 206-214 doi:10.1016/j.ocemod.2010.07.008

Warn-Varnas, A., J. Hawkins, K. G. Lamb, S. Piacsek, S. Chin-Bing, D. King and G. Burgos, 2010:
Solitary wave generation dynamics at Luzon Strait
Ocean Modelling 31 9-27 doi:10.1016/j.ocemod.2009.08.002

Warn-Varnas, A., S. A. Chin Bing, D. B. King, J. Hawkins and K. Lamb, 2010:
Effects on acoustics caused by ocean solitons, Part A: Oceanography
Nonlinear Analysis vol 71 1807-1817 doi:10.1016/j.na.2009.02.104

Xu, X., W. J. Schmitz, H. E. Hurlburt, P. J. Hogan, and E. P. Chassignet, 2010:
Transport of Nordic Seas overflow water into and within the Irminger Sea: An eddy-resolving simulation and observations
Journal of Geophysical Research vol 115 C12048 doi:10.1029/2010JC006351

Zamudio, L., E. J. Metzger and P. J. Hogan, 2010:
Gulf of California response to Hurricane Juliette
Ocean Modelling vol 33 doi:10.1016/j.ocemod.2009.11.005

Zheng, Y., T. Shinda, G. N. Kiladis, J. Lin, E. J. Metzger, H. E. Hurlburt and B. S. Giese, 2010:
Upper-Ocean Processes under the Stratus Cloud Deck in the Southeast Pacific Ocean
Journal of Physical Oceanography vol 40 doi:10.1175/2009JPO4213.1




2009

Arbic, B. K., J. F. Shriver, P. J. Hogan, H. E. Hurlburt, J. L. McClean, E. J. Metzger, R. B. Scott, A. Sen, O. M. Smedstad and A. J. Wallcraft, 2009:
Estimates of Bottom flows and bottom boundary layer dissipation of the oceanic general circulation from global high-resolution models
Journal of Geophysical Research vol114, doi:10.1029/2008JC005072

Barron, C. N., A. B. Kara and G. A. Jacobs, 2009:
Objective estimates of westward Rossby wave and eddy propagation from sea surface height analyses
Journal of Geophysical Research, vol 114, C03013, doi:10.1029/2008JC005044

Barron, C. N., R. W. Helber, G. A. Jacobs, M. Gunduz and P. Spence, 2009:
Acoustic Impact of Short-term Ocean Variability in the Okinawa Trough
MTS/IEEE Conference Oceans 2009

Blain, C. A., R. S. Linzell, A. D. Weidemann and P. E. Lyon, 2009:
A Tool for Rapid Configuation of a River Model
MTS/IEEE Conference Oceans 2009

Blain, C. A., M. K. Cambazoglu and C. H. Kourafalou, 2009:
Modeling the Dardanelles Strait Outflow Plume using a Coupled Model System
MTS/IEEE Conference Oceans 2009

Burrage, D.M., J. W. Book and P. J. Martin, 2009:
Eddies and filaments of the Western Adriatic Current near Cape Gargano: Analysis and prediction
Journal of Marine Systems vol 78 S205-S226

Carnes, M. R. 2009:
Description and Evaluation of GDEM-v3.0
NRL Report NRL/MR/7330--09-9165

Casagrande, G., A. Warn-Varnas, Y. Stephan and T. Folegot, 2009:
Genesis of the coupling of internal wave modes in the Strait of Messina
Journal of Marine Systems vol 78 S191-S204

Chassignet, E. P., H. E. Hurlburt, E. J. Metzger, O. M. Smedstad, J. A. Cummings, G. R. Halliwell, R. Bleck, R. Baraille, A. J. Wallcraft and C. Lozano, 2009:
US GODAE Global Ocean Prediction with the HYbrid Coordinate Ocean Model (HYCOM)
Oceanography vol 29, 64-75

Chu, P., C. A. Blain and R. S. Linzell, 2009:
Development of a Relocatable Coastal Forecast System for the US Navy
MTS/IEEE Conference Oceans 2009

Coelho, E., G. Peggion, C. Rowley, G. A. Jacobs, R. Allard and E. Rodriguez, 2009:
A note on NCOM temperature forecast error calibration using the ensemble transform
Journal of Marine Systems vol 78 S272-281

Coelho, E. F., C. Rowley and G. A. Jacobs, 2009:
Ocean Data Assimilation Guidance Using Uncertainty Forecasts
MTS/IEEE Conference Oceans 2009

Cummings, J., L. Bertino, P. Brasseur, I. Fukumori, M. Kamachi, M. Martin, K. Mogensen, P. Oke, C. Testut, J. Verron and A. Weaver, 2009:
Ocean Data Assimilation Systems for GODAE
Oceanography vol 22 no 3 96-109

Dombrowsky, E., L. Bertino, G. B. Bassington, E. P. Chassignet, F. Davidson, H. E. Hurlburt, M. Kamachi, T. Lee, M. J. Martin, S. Mei and M. Tonani, 2009:
GODEA Systems in Operation
Oceanography vol 22 no3 80-95

Dukhovskoy, D. S., S. L. Morey, P. J. Martin, J. J. O'Brien and C. Cooper, 2009:
Application of a vanishing, quasi-sigma, vertical coordinate for simulation of high-speed, deep currents over the Sigsbee Escarpment in the Gulf of Mexico
Ocean Modelling vol 28 250-265

Dykes, J. D., D. W. Wang and J. W. Book, 2009:
An evaluation of a high-resolution operational wave forecasting system in the Adriatic Sea
Journal of Marine Systems vol 78 S255-S271

Dykes, J. D., J. F. Shriver and S. Ziegeler, 2009:
Automation of Ocean Model Performance Metrics
MTS/IEEE Conference Oceans 2009

Ewards, K. L., J. Veeramony, D. Wang, K. T. Holland and Y. L. Hsu, 2009:
Sensitivity of Delft3D to Input Conditions
MTS/IEEE Converence Oceans 2009

Gentemann, C. L., P. J. Minnett, J. Sienkiewicz, M. Demaria, J. Cummings, Y. Jin, J. D. Doyle, L.Gramer, C. N. Barron, K. S. Casy and C. J. Donlon, 2009:
MISST The Multi-Sensor Improved Sea Surface Temperature Project
Oceanography vol 22, 76-87

Halliwell, G. R., A. Barth, R. H. Weisberg, P. J. Hogan, O. M. Smedstad and J. Cummings, 2009:
Impact of GODAE products on nested HYCOM simulations of the West Florida Shelf
Ocean Dynamics vol. 59, doi:10.1007.s10236-008-0173-2

Hawkins, J. A. and A. Warn-Varnas, 2009:
Internal gravity waves in the Strait of Luzon: Dispersion studies using Fourier and continuous wavelet transforms
The European Physical Journal vol 174, doi:10.1140/epjst/e2009-01103-x

Helber, R. W., A. B. Kara, C. N. Barron and T. P. Boyer, 2009:
Mixed layer depth in the Aegean, Marmara, Black and Azov Seas: Part II: Relation to the sonic layer depth
Journal of Marine Systems vol 78 S181-S190

Helber, R. W., J. F. Shriver, C. N. Barron and O. M. Smedstad, 2009:
The impactof the number of satellite altimeters used in a data assimilative ocean prediction system
MTS/IEEE Conference Oceans 2009

Hernadaz, F., L Bertino, G. Brassington, E. Chassignet, J. Cummings, F. Davidson, M. Drevillon, G. Garric, M. Kamachi, J-M. Lellouche, R. Mahdon, M. Martin, A. Ratsimandresy and C. Regnier, 2009
Validation and Intercomparison Studies Within GODAE
Oceanography vol 22 no3 128-143

Hong, X., J. Cummings, P. Martin and J. Doyle, 2009:
Ocean Data Assimilation: A Coastal Application
Data Assimilation for Atmospheric, Oceanic and Hydrolgic Applications Springer, 269-292

Hurlburt, H. E., G. B. Brassington, Y. Drillet, M. Kamachi, M. Benkiran, R. Bourdalle-Badie, E. P. Chassignet, G. A. Jacobs, O. Le Galloudec, J. M. Lellouche, E. J. Metzger, O. M. Smedstad and A. J. Wallcraft, 2009:
High Resolution Global and Basin Scale Ocean Analyses and Forecasts
Oceanography vol 22, no3 110-127

Jacobs, G. A., R. Woodham, D. Jourdan and J. Braithwaite, 2009:
GODAE Applications useful to navies throughout the world
Oceanography vol 22 no3 182-189

Jensen, T. G., T. Campball, T. A. Smith, R.J. Small and R. Allard, 2009:
Cold air outbreak over the Kuroshio Extension Region
MTS/IEEE Converence Oceans 2009

Jolliff, J. K., J. C. Kindle, I. Shulman, B. Penta, M. Friedrichs, R. Helber and R. A. Arnone, 2009:
Summary diagrams for coupled hydrodynamic-ecosystem model skill assessment
Journal of Marine Systems 76 64-82

Kara, A. B., C. N. Barron and T. P. Boyer, 2009:
Evaluations of SST climatologies in the tropical Pacific Ocean
Journal of Geophyscal Research vol 114, C02021 doi:10.1029/2008JC004909

Kara, A. B., A. J. Wallcraft, P. J. Maring, R. L. Pauley, 2009:
Optimizing surface winds using QuikSCAT measurements in the Mediterranean Sea during 2000-2006
Journal of Marine Systems vol 78 S119-S131

Kara, A. B., A. J. Wallcraft, H. E. Hurlburt and W. Y. Loh, 2009:
Quantifying SST errors from an OGCM in relation to atmospheric forcing variables
Ocean Modelling vol 29, 43-57

Kara, A. B., A. J. Wallcraft, H. E. Hurlburt and W. Y. Loh, 2009:
Which surface atmospheric variable drives the seasonal cycle of sea surface temperature over the global ocean?
Journal of Geophysical Research vol 114, D05101, doi:10.1029/2008JD010420

Kara, A.B., R. W. Helber, T. P. Boyer and J. B. Elsner, 2009:
Mixed layer depth in the Aegean Marmara, Black and Azov Seas: Part I: General features
Journal of Marine Systems vol 78 S169-S180

Keen, T. R. and R. A. Allard, 2009:
Data Assimilation in the Littoral Zone Part I: Analysis of the Navy Coupled Ocean Data Assimilation System (NCODA)
NRL Report NRL/MR/7320--09-9171

Kourafalou, V. H., G. Peng, H. Kang, P. J. Hogan, O. M. Smedstad and R. H. Weisberg, 2009:
Evaluation of Global Ocean Data Assimilation Experiment products on South Florida nested simulations with the HYbrid Coordinate Ocean Model
Ocean Dynamics vol 59, C02021, doi:10.1007/s10236-008-0160-7

Le Traon, P. Y., G. Larnicol, S. Guinehut, S. Pouliquen, A. Bentamy, D. Roemmich, C. Donlon, H. Roquet, G. A. Jacobs, D. Griffin, F. Bonjean, N. Hoepffner and L. A. Breivik, 2009:
Data Assembly and Processing for Operational Oceanography
Oceanography vol 22, no2 56-69

Lin, J. L., T. Shinoda, B. Liebmann, T. Qian, W. Han, P. Roundy, J. Zhou and Y. Zheng, 2009:
Interseasonal Variability Associated with Summer Precipitation over South America Simulated by 14 IPCC AR4 Coupled GCMs
American Meteorological Society doi:10.1175/2009MWRR2777.1

Marin, P. J., J. W. Book, D. M. Burrage, C. Rowley and M. Tudor, 2009:
Comparison of model-simulated and observed currents in the central Adraitic during DART
Journal of Geophysical Research vol 114, C01S05 doi:10.1029/2008JC004842

Martin, P. J., C. N. Barron, L. F. Smedstad, T. J. Campbell, A. J. Wallcraft, R. C. Rhodes, C. Rowley, T. L. Townsend and S. N. Carroll, 2009:
User's Manual for the Navy Coastal Ocean Model (NCOM) version 4.0
NRL Report NRL/MR/7320--09-9151

Martin, P. J., S. R. Smith, P. G. Posey, G. M. Dawson and S. H. Riedlinger, 2009:
Use of the Oregon State University Tidal Inversion Software (OTIS) to Generate Improved Tidal Prediction in the East-Asian Seas
NRL Report NRL/MR/7320--09-9176

McKay, P. and C. A. Blain, 2009:
Toward Developing a Hydrodynamic Flow and Inundaion Model of the Lower Pearl River
MTS/IEEE Conference Oceans 2009

Mendoza, W. G., R. G. Zika, J. E. Corredor, D. S. Ko and C. N. K. Mooers, 2009:
Developmental strategy for effective sampling to detect possible nutrient fluxes in oligotrophic coastal reef waters in the Caribbean
Journal of Operational Oceanography vol 2 35-47

Metzger, E. J., O. M. Smedstad and S. N. Carroll, 2009:
User's Manual for the Global Ocean Forecast System (GOFS) Version 3.0
NRL Report NRL/MR/7320--09-9175

Ngodock, H. E., S. R. Smith and G. A. Jacobs, 2009:
Cycling the Representer Method with Nonlinear Methods
Data Assimilation for Atmospheric Oceanic and Hydrologic Applications 321-340

Oke, P., M. Balmadeda, M. Berkiran, J. A. Cummings, E. Dombrowski, Y. Fujii, S. Guinehut, G. Larnicol, P-Y Le Traon and M Martin, 2009:
Observing System Evaluations using GODAE Systems
Oceanography vol 22 144-153

Plant, N. G., K. L. Edwards J. M. Kaihatu, J. Veeramony, L. Hsu, K. T. Holland, 2009:
The effect of bathymetric filtering on nearshore process model results
Coastal Engineering vol 56, doi:10.1016/j.coastaleng.2008.10.010

Posey, P. G., E. J. Metzger, A. J. Wallcraft, O. M. Smedstad and M. W. Phelps, 2009:
Real-timeData Assimilation of Ice Concentration into a Coupled Ice/Ocean Forecast System
MTS/IEEE Conference Oceans 2009

Rixen, M., J. Book, A. Carta, P. Martin, C. Rowley, M. Hulbert, A. Quaid, W. Goode and R. Preller, 2009:
Improved ocean prediction skill and reduced uncertainty in the coastal region from multi-model super-ensembles
Journal of Marine Systems vol 78 S282-S289

Rogers, W. E. and T. J. Campbell, 2009:
Implementation of Curvilinear Coordinate System in the WAVEWATCH III Model
NRL Report NRL/MR/7320--09-9193

Rogers, W. E. and K. T. Holland, 2009:
A Study of dissipation of wind-waves by mud at Cassino Beach, Brazil: Prediction and inversion
Continental Shelf Research vol 29, 676-690

Shaw, P. T., D. S. Ko and S. Y. Chao, 2009:
Internal solitary waves induced by flow over a ridge: With applications to the northern South China Sea
Journal of Geophysical Research vol 114 doi:10.1029/2008JC005007

Shinoda, T. and J. Lin, 2009:
Interannual Variability of the Upper Ocean in the Southeast Pacific Stratus Cloud Region
Journal of Climate vol 22 5072-5088

Smith, T. A., T. Campbell, R. J. Small and R. Allard, 2009:
Two-Way Atmospheric and Oceanic Coupling of the Adriatic Bora
MTS/IEEE Conference Oceans 2009

Subrahmanyam, B., D. M. Heffner, D. Cromwell and J. F. Shriver, 2009:
Detection of Rossby waves in multi-parameters in multi-mission satellite observations and HYCOM simulations in the Indian Ocean
Remote Sensing of Environment vol 113 doi:10.1016/j.rse.2009.02.017

Tang, H. S., T. R. Keen and R. Khanbilvardi, 2009:
A model-coupling framework for nearshore waves, currents, sediment transport, and seabed morphology
Commun Nonlinear Sci Numer Simulat vol 14 doi:10.1016/j.cnsns.2008.10.012

Tang, H. S. and T. R. Keen, 2009:
Analytical Solutions for Open Channel Temperature Response to Unsteady Thermal Discharge and Boundary Heating
Journal of Hydraulic Engineering vol 135, 327-332

Thoppil, P. G. and P. J. Hogan, 2009:
On the Mechanisms of Episodic Salinity Outflow Events in the Strait of Hormuz
Journal of Physical Oceanography vol 39, doi:10.1175/2008JPO3941.1

van Sebille, C. N. Barron, A. Biastock, P. J. van Leewen, F. C. Fossepoel and W. P. M. de Ruijter, 2009:
Relating Agulhas leakage to the Agulhas Current retroflection location
Ocean Science 5, 511-521

van Sebille, E., P. J. van Leeuwen, A. Biastoch, C. N. Barron and W. P. M. de Ruijter, 2009:
Lagrangian validation of numerical drifter trajectories using drifting buoys: Application to the Agulhas system
Ocean Modelling vol 29, 269-276

Villibic, I., J. W. Book, G. B. Paklar, M. Orlic, V. Dadic, M. Tudor, P. J. Martin, M. Pasaric, B. Grbec, F. Matic, H. Mihanovic, and M. Morovic, 2009:
West Adriatic coastal water excursions into the East Adriatic
Journal of Marine Systems vol 78 S132-S156

Wallcraft, A. J., A. B. Kara, C. N. Barron, E. J. Metzger, R. L. Pauley and M. A. Bourassa, 2009:
Comparisons of monthly mean 10m wind speeds from satellites and SWP products over the global ocean
Journal of Geophysical Research 114,D16109 doi:10.1029/2008JD011696

Wallcraft, A. J., E. J. Metzger and S. N. Carroll, 2009:
Software Design Description for the HYbrid Coordinate Ocean Model (HYCOM) version 2.2
NRL Report NRL/MR/7320--09-9166

2008

Allard, R., J. Dykes, Y. L. Hsu, J. Kaihatu and D. Conely, 2008:
A real-time nearshore wave and current and wave prediction system
Journal of Marine Systems vol 69 doi:10.1016/j.jmarsys.2007.02.020

Blain, C. A., R. S. Linzell and T. C. Massey, 2010:
MeshGUI: A Mesh Generation and Editing Toolset for the ADCIRC Model
NRL Report NRL/MR/7320--08-9083

Chassignet, E. P. and H. E. Hurlburt, 2008:
Ocean U.S. GODAE: Global Ocean Prediction with the HYbrid Coordinate Ocean Model (HYCOM)
Mercator Quarterly Newsletter vol 31

Haza, A. C., A. C. Poje, T. M. Ozgokmen and P. Martin, 2008:
Relative dispersion from a high-resolution coastal model of the Adriatic Sea
Ocean Modeling vol 22, 48-65

Dietrich, D. E., Y. H. Tseng, R. Medina, S. A. Piacsek, M. Liste, M. Olabarrieta, M. J. Bowman and A. Mehra, 2008:
Mediterranean Overflow Water (MOW) simulation using a coupled multiple-grid Mediterranean Sea/North Atlantic Ocean Model
Journal of Geophysical Research vol 113 doi:10.1029/2006JC003914

Green, R. E., R. W. Gould and D. S. Ko, 2008:
Statistical models for sediment/detritus and dissolved absorption coefficients in coastal waters of the northern Gulf of Mexico
Dynamics of Atmospheres and Oceans vol 45, 102-134

Heffner, D. M., B. Subrahmanyam and J. F. Shriver, 2008:
Indian Ocean Rossby waves detected in HYCOM sea surface salinity
Geophysical Research Letters vol 35 doi:10.1029/2007GL032760

Helber, R. W., C. N. Barron, M. R. Carnes and R. A. Zingarelli, 2008:
Evaluating the sonic layer depth relative to the mixed layer depth
Journal of Geophysical Research vol. 113 doi:10.1029/2007JC004595

Hong, X., R. M. Hodur and P. J. Martin, 2008:
Numerical Simulation of Deep-Water Convection in the Gulf of Lion
Pure and Applied Geophysics vol 164, doi:10.1007/s00024-007-0261-0

Hurlburt, H. E., E. P. Chassignet, J. A. Cummings, A. B. Kara, E. J. Metzger, J. F. Shriver, O. M. Smedstad, A. J. Wallcraft and C. N. Barron, 2008:
Eddy-Resolving Global Ocean Prediction
Ocean Modeling in an Eddying Regime 353-382

Hurlburt, H. E., and P. J. Hogan, 2008:
The Gulf Stream pathway and the impacts of the eddy-driven abyssal circulation and the Deep Western Boundary Current
Dynamics of Atmosphers and Oceans vol 45 71-101

Hurlburt, H. E., E. J. Metzger, P. J. Hogan, C. E. Tilburg and J. F. Shriver, 2008:
Steering of upper ocean currents and fronts by the topographically constrained abyssal circulation
Dynamics of Atmosphers and Oceans vol 45 102-134

Hyun, K. H. and P. J. Hogan, 2008:
Topographic Effects on the Anticyclonic Eddy Evolution: A Modeling Study
Cont. Shelf vol 28 1246-1260

Hyun, K. H. and P. J. Hogan, 2008:
Topographic effects on the path and evolution of Loop Current Eddies
Journal of Geophysical Research vol 113 C12026, doi:10.1029/2007JC004155

Jolliff, J. K., J. C. Kindle, B. Penta, R. Helber, Z. Lee, I. Shulman, R. Arnone, and C. Rowley, 2008:
On the Relationship Between Satellite-Estimated Bio-Optical and Thermal Properties in the Gulf of Mexico
Journal of Geophysical Research vol 113, doi:10.1029/2006/JG00373

Kara, A. B., A. J. Wallcraft, C. N. Barron, H. E. Hurlburt and M. A Bourassa, 2008:
Accuracy of 10 m winds from satellites and NWP products near land-sea boundaries
Journal of Geophysical Research vol. 113 doi:10.1029/2007JC004516

Kara, A. B., C. N. Barron, A. J. Wallcraft, T. Oguz and K. S. Casey, 2008:
Advantages of fine resolution SST's for small ocean basins: Evaluation in the Black Sea
Journal of Geophysical Research vol 113, doi:10.1029/2007JC004569

Kara, A. B., A. J. Wallcraft, H. E. Hurlburt and E. V. Stanev, 2008:
Air-sea fluxes and river discharges in the Black Sea with a focus on the Danube and Bosphorus
Journal of Marine Systems vol 74 doi:10.1016/j.jmarsys.2007.11.010

Kara, A. B., A. J. Wallcraft and M. A. Bourassa, 2008:
Air-sea stability effects on the 10m winds over the global ocean: Evaluations of air-sea flux algorithms
Journal of Geophysical Research vol 113, doi:10.1029/2007JC004324

Kara, A. B. and C. N. Barron, 2008:
Comment on "Seasonal heat budgets of the Red and Black seas" by Matsoukas et al.
Journal of Geophysical Research vol 113, C12008. doi:10.1029/2008JC004760

Kara, A. B., C. N. Barron, A. J. Wallcraft and T. Oguz, 2008:
Interannual Variability of Sea Surface Height over the Black Sea: Relation to Climatic Patterns
Earth Interactions vol 12, doi:10.1175/2008E1259.1

Kara, A. B., E. J. Metzger, H. E. Hurlburt, A. J. Wallcraft and E. P. Chassignet, 2008:
Multistatistics metric evaluation of ocean general circulation model sea surface temperature: Application to 0.08° Pacific Hybrid Coordinate Ocean Model Simulations
Journal of Geophysical Research vol 113, C12018, doi:10.1029/2008JC004878

Kara, A. B., A. J. Wallcraft, P. J. Martin and E. P. Chassignet, 2008:
Performance of mixed layer models in simulating SST in the equatorial Pacific Ocean
Journal of Geophysical Research vol 113, doi:10.1029/2007JC004250

Ko, D. S., P. J. Martin, C. D. Rowley and R. H. Preller, 2008:
A real-time coastal ocean prediction experiment for MREA04
Journal of Marine Systems vol 69 doi:10.1016/j.jmarsys.2007.02.022

Lin, I. I., C. C. Wu, I. F. Pun and D. S. Ko, 2008:
Upper-Ocean Thermal Structure and the Western North Pacific Category 5 Typhoons, Part 1: Ocean Features and the Category 5 Typhoons Intensification
Monthly Weather Review vol 136, 3288-3306

Martin, P., C. N. Barron, L. F. Smedstad, A. J. Wallcraft, R. C. Rhodes, T. J. Campbell, C. Rowley and S. N. Carrol, 2008:
Software Design Description for the Navy Coastal Ocean Model (NCOM) Version 4.0
NRL Report NRL/MR/7320--08-9149

Metzger, E. J., H. E. Hurlburt, A. J. Wallcraft, J. F. Shriver, L. F. Smedstad, O. M. Smedstad, P. Thoppil and D. S. Franklin, 2008:
Validation Test Report for the Global Ocean Prediction System v3.0 - 1/12° HYCOM/NCODA: Phase 1
NRL Report NRL/MR/7320--08-9148

Posey, P. G., L. F. Smedstad, R. H. Preller, E. J. Metzger and S. Carroll, 2008:
Software Design Description for the Polar Ice Prediction System (PIPS) Version 3.0
NRL Report NRL/MR/7320--08-9150

Posey, P. G., L. F. Smedstad, R. H. Preller, E. J. Metzger and S. N. Carroll, 2008:
User's Manual for the Polar Ice Prediction System (PIPS) 3.0
NRL Report NRL/MR/7320--08-9154

Posey, P. G., R. A. Allard, R. H. Preller and G. M. Dawson, 2008:
Validation of the Global Relocatable Tide/Surge Model PCTides
Journal of Atmospheric and Oceanic Technology vol 25 doi:10.1175/2007JTECHO533.1

Smith, S. R. and H. E. Ngodock, 2008:
Cycling the Representer Method for 4D-variational data assimilation with the Navy Coastal Model
Ocean Modeling vol 24 92-107

Wallcraft, A. J., A. B. Kara, H. E. Hurlburt, E. P. Chassignet and G. H. Halliwell, 2008:
Value of bulk heat flux parameterizations for ocean SST prediction
Journal of Marine Systems vol 74 doi:10.1016/jmarsys.2008.01.009

Zamudio, L., E. J. Metzger and P. J. Hogan, 2008:
A note on coastally trapped waves generated by the wind at the Northern Bight of Panama
Atmosfera vol 21, 241-248

Zamudio, L. and P. J. Hogan, 2008:
Nesting the Gulf of Mexico in Atlantic HYCOM: Oceanographic processes generated by Hurricane Ivan
Ocean Modelling vol 21, 106-125

Zamudio, L., P. J. Hogan and E. J. Metzger, 2008:
Summer generation of the Southern Gulf of California eddy train
Journal of Geophysical Research vol 113, doi:10.1029/2007JC004468

2007

Barron, C. N., A. B. Kara, R. C. Rhodes, C. Rowley and J. F. Shriver, 2007:
Validation Test Report for the 1/8° Global Navy Coastal Ocean Model Nowcast/Forecast System
NRL Tech Report NRL/MR/7320--07-9019

Barron, C. N., L. F. Smedstad, J. M. Dastugue and O. M. Smedstad, 2007:
Evaluation of ocean models using observed and simulated drifter trajectories: Impact of sea surface height on synthetic profiles for data assimilation
Journal of Geophysical Research, 112,

Blain, C. A. and R. H. Preller, 2007:
High Resolution Modeling of Coastal Inundation: User Requirements and Current Practice, a Navy Perspective
Marine Technology Society Journal 41

Blain, C. A. and R. S. Linzell, 2007:
Makef15: An ADCIRC Model Fort.15 Input File Creation GUI for Parameter Specification and Periodic Boundary Forcing
NRL Tech Report NRL/MR/7320--07-9081

Blain, C. A., R. S. Linsell and B. Estrade, 2007:
Makef22: An ADCIRC Model Fort.22 Input File Creation Tool for Surface Wind and Pressure Forcing
NRL Tech Report NRL/MR/7320--07-9082

Chao, S. Y., D. S. Ko, R. C. Lien and P. T. Shaw, 2007:
Assessing the west ridge of Luzon Strait as an internal wave mediator
J. Oceanogr. 63(6) 897-911

Cheng, W., M. J. McPhaden, D. Zhang and E. J. Metzger, 2007:
Recent Changes in the Pacific Subtropical Cells Inferred from and Eddy-Resolving Ocean Circulation Model
Journal of Physical Oceanography 37 1340-1355

Chu, P. C., S. Mancini, E. L. Gottshall, D. S. Cwalina and C. N. Barron, 2007:
Sensitivity of Satellite Altimetry Data Assimilation on a Weapon Acoustic Preset
IEEE Journal of Oceanic Engineering 32 2

Haza, A. C., L. I. Piterbarg, P. Martin, T. M. Ozgokmen and A. Griffa, 2007:
A Lagrangian subgridscale model for particle transport improvement and application in the Adriatic Sea using the Navy Coastal Model
Continental Shelf Research 17 68-91

Haza, A. C., A. Griffa, P. J. Martin, A. Molcard, T. M. Ozgokmen, A. C. Poje, R. Barbanti, J. W. Book, P. M. Poulain, M. Rixen and P. Zanasca 2007:
Model-based directed drifter launches in the Adriatic Sea: Results from the DART experiment
Geophysical Research Letters 34 doi:10.1029/2007/GL029634

Kaihatu, J. M., J. Veeramony, K. L. Edwards and J. T. Kirby, 2007:
Asymptotic behavior of frequency and wave number spectra of nearshore shoaling and breaking waves
Journal of Geophysical Research doi:10.1029/2006JC003817

Kara, A. B., E. J. Metzger, and M. A. Bourassa, 2007:
Ocean current and wave effects on wind stress drag coefficient over the global ocean.
Geophysical Research Letters, 34, 4.

Kara, A. B, A. J. Wallcraft and H. E. Hurlburt, 2007:
A Correction for Land Contamination of Atmospheric Variables near Land-Sea Boundaries
Journal of Physical Oceanography, 37, 803-818

Kara, A. B. and C. N. Barron, 2007:
Fine-resolution satellite-based daily sea surface temperatures over the global ocean
Journal of Geophysical Research 112 C05041, doi:10.1029/2006JC004021

Kara, A. B., A. J. Wallcraft, E. J. Metzger, H. E. Hurlburt and C. W. Fairall, 2007:
Wind Stress Drag Coefficient over the Global Ocean
Journal of Climate 20 5856-5864

Kara, A. B., H. E. Hurlburt and W. Y. Loh, 2007:
Which near-surface atmospheric variable drives air-sea temperature differences over the global ocean?
J. Geophysical Research 112 C05020 doi:10.1029/2006/JC003833

Keen, T. R., W. E. Rogers, J. Dykes, J. M. Kaihatu and K. T. Holland, 2007:
Determining heterogenous bottom friction distributions using a numerical wave model
J. Geophys. Res. 112 doi:10.1029/2005JC003309

Kelly, K. A., L. Thompson, W. Cheng, and E. J. Metzger, 2007:
Evaluation of HYCOM in the Kuroshio Extension region using new metrics.
Journal of Geophysical Research-Oceans, 112, 17.

Ko, D. S., P. J. Martin, C. Rowley and R. H. Preller, 2007:
A Real-Time Coastal Ocean Prediction Experiment for MREA04
J. Marine Systems doi:10.1016/j.jmarsys.2007.02.022

Ngodock, H. E., S. R. Smith and G. A. Jacobs, 2007:
Cycling the Representer Algorithm for Variational Data Assimilation with the Lorenz Attractor
Monthly Weather Review 135

Ngodock, H. E., S. R. Smith and G. A. Jacobs, 2007:
Cycling the representer algorithm for variational data assimilation with a nonlinear reduced gravity ocean model
Ocean Modelling 29 101-111

Prasad, T. G. and P. J. Hogan, 2007:
Upper-ocean response to Hurricane Ivan in a 1/25° nested Gulf of Mexico HYCOM
Journal of Geophysical Research 112 C04013, doi:1029/2006JC003695

Rogers, W. E., J. M. Kaihatu, L. Hsu, R. E. Jensen, J. D. Dykes and K. T. Holland, 2007:
Forecasting and hindcasting waves with the SWAN model in the Southern California Bight
Coastal Engineering 54

Rogers, W. E. and D. W. Wang, 2007:
Directional Validation of Wave Predictions
J. Atmos. Oceanic Technology 24 504-520

Rogers, W. E., 2007:
Wave Modelling - The State of the Art
Progress in Oceanography 75 603-764

Shriver, J. F., H. E. Hurlburt, O. M. Smedstad, A. J. Wallcraft and R. C. Rhodes, 2007:
1/32° real-time global ocean prediction and value-added over 1/16° resolution
Journal of Marine Systems 65

Shulman, I., J. Kindle, P. Martin, S. deRada, J. Doyle, B. Penta, S. Anderson, F. Chavez, J. Paduan, S. Ramp 2007:
Modeling of upwelling/relaxation events with the Navy Coastal Ocean Model
Journal of Geophysical Research 112 doi:10.1029/2006/JC003946

Warn-Varnas, A., J. Hawkins, P. K. Smolarkiewics, S. A. Chin-Bing, D. King and Z. Hallock, 2007:
Solitary wave effects north of Strait of Messina
Ocean Modelling 18, 97-121

Warn-Varnas, A., A. Gangopadhyay, J. A. Hawkins, 2007:
Water masses the Monterey Bay during the summer of 2000
Continental Shelf Research vol 27,1379-1398

Warn-Varnas, A., S. A. Chin-Bing, D. B. King, J. A. Hawkins, K. G. Lamb and J. F. Lynch, 2007:
Winter PRIMER Ocean-Acoustic Solitary Wave Modeling Studies
IEEE Journal of Oceanic Engineering vol 32, no2

Zamudio, L., H. E. Hurlburt, E. J. Metzger and C. E. Tilburg, 2007:
Tropical wave-induced oceanic eddies at Cabo Corrientes and the Maria Island, Mexico
Journal of Geophysical Research 112, doi:10.1029/2006JC004018



2006
Adjerid, S. and T. C. Massey, 2006:
Superconvergence of discontinuous Galerkin solutions for a nonlinear scalar hyperbolic problem
Comput. Methods Appl. Mech. Energ 195 3331-3346

Barron, C. N. and A. B. Kara, 2006:
Satellite-based daily SSTs over the global ocean.
Geophysical Research Letters, 33, 4.

Barron, C. N., A. B. Kara, P. J. Martin, R. C. Rhodes, and L. F. Smedstad 2006:
Formulation, implementation and examination of vertical coordinate choices in the Global Navy Coastal Ocean Model (NCOM).
Ocean Modelling, 11, 347-375.

Barron, C. N., R. C. Rhodes, L. F. Smedstad, C. Rowley, R. Preller and G. A Jacobs 2006:
First Global Ocean Model Developed at NRL Stennis
Labstracts, September 2006

Heron, S. F., E. J. Metzger, and W. J. Skirving, 2006:
Seasonal variations of the ocean surface circulation in the vicinity of Palau.
Journal of Oceanography, 62, 413-426.

Hogan, P. J. and H. E. Hurlburt 2006:
Why Do Intrathermocline Eddies Form in the Japan Sea?
Oceanography 19 3

Hsu, Y. L., J. D. Dykes, R. Allard and J. M. Kaihatu, 2006:
Evaluation of Delft3D Performance in Nearshore Flows
NRL Tech Report NRL/MR/7320--06-8984

Hsu, Y. L., J. D. Dykes and R. Allard 2006:
Software Development for Producing Standard Navy Surf Output from Deflt3D
NRL Tech Report NRL/MR/7320--06-8990

Jacobs, G. A. 2006:
Large-Scale Ocean Circulation
Remote Sensing of the Marine Environment Chapter 2

Kara, A. B. and H. E. Hurlburt, 2006:
Daily inter-annual simulations of SST and MLD using atmospherically forced OGCMs: Model evaluation in comparison to buoy time series.
Journal of Marine Systems, 62, 95-119.

Kara, A. B., C. N. Barron, P. J. Martin, L. F. Smedstad and R. C. Rhodes, 2006:
Validation of interannual simulations from the 1/8 degrees global Navy Coastal Ocean Model (NCOM).
Ocean Modelling, 11, 376-398.

Keen, T. R., D. S. Ko, R. L. Slingerland, S. Riedlinger and P. Flynn 2006:
Potential transport pathways of terrigenous material in the Gulf of Papua
Geophysical Research Letters 33

Massey, T. C. and C. A. Blain, 2006:
In search of a consistent and conservative mass flux for the GWCE.
Computer Methods in Applied Mechanics and Engineering, 195, 571-587.

Ngodock, H. E., G. A. Jacobs and M. Chen, 2006:
The representer method, the ensemble Kalman filter and the ensemble Kalm smoother: A comparison study using a nonlinear reduced gravity ocean model
Ocean Modeling 12 378-400

Rogers, W. E. and D. W. Wang, 2006:
On Validation of Directional Wave Predictions: Review and Discussion
NRL Tech Report NRL/MR/7320--06-8970

Teague, W. J., E. Jarosz, M. R. Carnes, D. A. Mitchell, and P. J. Hogan, 2006:
Low-frequency current variability observed at the shelfbreak in the northeastern Gulf of Mexico: May-October, 2004.
Continental Shelf Research, 26, 2559-2582.

Teague, W. J., E. Jarosz, T. R. Keen, D. W. Wang and M. S. Hulbert , 2006:
Bottom scour observed under Hurricane Ivan
Geophysical Research Letters, 33,

Zamudio, L., H. E. Hurlburt, E. J. Metzger, S. L. Morey, J. J. O'Brien, C. Tilburg, and J. Zavala-Hidalgo, 2006:
Interannual variability of Tehuantepec eddies.
Journal of Geophysical Research-Oceans, 111, 21.



2005

Blain, C. A. and T. C. Massey, 2005:
Application of a coupled discontinuous-continuous Galerkin finite element shallow water model to coastal ocean dynamics.
Ocean Modelling, 10, 283-315.

Chassignet, E. P., H. E. Hurlburt, O. M. Smedstad, C. N. Barron, D. S. Ko, R. C. Rhodes, J. F. Shriver, A. J. Wallcraft and R. A. Arnone, 2005:
Assessment of Data Assimilative Ocean Models in the Gulf of Mexico Using Ocean Color
Circulation in the Gulf of Mexico Observations and Models 87-100

Cummings, J., 2005:
Operational multivariate ocean data assimilation
Q. J. R. Meteorol. Soc 131 3583-3604

Hogan, P. J. and H. E. Hurlburt, 2005:
Sensitivity of simulated circulation dynamics to the choice of surface wind forcing in the Japan/East Sea.
Deep-Sea Research Part II-Topical Studies in Oceanography, 52, 1464-1489.

Jacobs, G. A., D. S. Ko, H. Ngodock, R. H. Preller, and S. K. Riedlinger, 2005:
Synoptic forcing of the Korea Strait transport.
Deep-Sea Research Part II-Topical Studies in Oceanography, 52, 1490-1504.

Jarosz, E., C. A. Blain, S. P. Murray, and M. Inoue, 2005:
Barotropic tides in the Bab el Mandab Strait - numerical simulations.
Continental Shelf Research, 25, 1225-1247.

Kara, A. B., H. E. Hurlburt, and A. J. Wallcraft, 2005:
Stability-dependent exchange coefficients for air-sea fluxes.
Journal of Atmospheric and Oceanic Technology, 22, 1080-1094.

Kara, A. B., A. J. Wallcraft, and H. E. Hurlburt, 2005:
How does solar attenuation depth affect the ocean mixed layer? Water turbidity and atmospheric forcing impacts on the simulation of seasonal mixed layer variability in the Turbid Black Sea.
Journal of Climate, 18, 389-409.

Kara, A. B., A. J. Wallcraft, and H. E. Hurlburt, 2005:
A new solar radiation penetration scheme for use in ocean mixed layer studies: An application to the Black Sea using a fine-resolution Hybrid Coordinate Ocean Model (HYCOM).
Journal of Physical Oceanography, 35, 13-32.

Kara, A. B., A. J. Wallcraft, and H. E. Hurlburt, 2005:
Sea surface temperature sensitivity to water turbidity from simulations of the turbid Black Sea using HYCOM.
Journal of Physical Oceanography, 35, 33-54.

Kara, A. B., H. E. Hurlburt, A. J. Wallcraft, and M. A. Bourassa, 2005:
Black sea mixed layer sensitivity to various wind and thermal forcing products on climatological time scales.
Journal of Climate, 18, 5266-5293.

Mitchell, D. A., W. J. Teague and K. R. Whitmer, 2005:
Evidence that Sea State Bias is different for ascending and descending tracks
Marine Geodesy 27 483-494

Moores, C. K., C. S. Menen, M. O. Bariner, I. Bano, R. C. Rhodes, C. N. Barron and F. Bub, 2005:
Cross Validating Ocean Prediction and Monitoring Systems
EOS 86

Rogers, W. E., P. A. Wittmann, D. W. Wang, R. M. Clancy and Y. L. Hsu, 2005:
Evaluations of Global Wave Prediction at the Fleet Numerical Meteorology a Oceanography Center
Weather and Forecasting 20 745-760

Smith, S. R. and G. A. Jacobs, 2005:
Seasonal circulation fields in the northern Gulf of Mexico calculated by assimilation current meter, shipboard ADCP, and drifter simultaneously with the shallow water equations
Continental Shelf Research 25 157-183

Smith, S. R., G. A. Jacobs and R. R. Leben, 2005:
Determining the applicability of the barotropic approximation to the mean seasonal flow through the Tsushima/Korean Strait using variational assimilation
Deep Sea Research II 20 1763-1783

Shaji, C., C. Wang, G. R. Halliwell, and A. Wallcraft, 2005:
Simulation of tropical pacific and Atlantic oceans using a hybrid coordinate ocean model.
Ocean Modelling, 9, 253-282.

Shriver, J. F., H. E. Hurlburt, O. M. Smedstad, A. J. Wallcraft and R. C. Rhodes2005:
1/32° real time global ocean prediction and value-added over the 1/16° resolution
Journal of Marine System 6.2

Wallcraft, A. J., A. B. Kara, and H. E. Hurlburt, 2005:
Convergence of Laplacian diffusion versus resolution of an ocean model.
Geophysical Research Letters, 32, 4.

Warn-Varnas, A., A. Gangopadhyay, J. A. Hawkins, and A. R. Robinson, 2005:
Wilkinson Basin area water masses: a revisit with EOFs.
Continental Shelf Research, 25, 277-296.


2004

Allard R., W. E. Rogers, S. N. Carroll and K. V. Rushing, 2004:
Validation Test Report for the Simulating Waves Nearshore Model (SWAN) Cycle III, Version 40.11
NRL Tech Report NRL/FR/7320--04-10,070

Barron, C. N., A. B. Kara, H. E. Hurlburt, C. Rowley, and L. F. Smedstad, 2004:
Sea surface height predictions from the global Navy Coastal Ocean Model during 1998-2001.
Journal of Atmospheric and Oceanic Technology, 21, 1876-1893.

Canuto, V. M., A. Howard, P. Hogan, Y. Cheng, M. S. Dubovikov, and L. M. Montenegro, 2004:
Modeling ocean deep convection.
Ocean Modelling, 7, 75-95.

Chen, Q., J. M. Kaihatu and P. A. Hwang, 2004:
Incorpration of the Wind Effects into Boussinesq Models
ASCE Journal of Waterways, Port Coastal & Ocean Engineering 312-321

Canuto, V. M., A. Howard, P. Hogan, Y. Cheng, M. S. Dubovikov and L. M. Montenegro, 2004:
Modeling Ocean Deep Convection
Ocean Modeling 7 75-95

Gille, S. T., E. J. Metzger and R. Tokmakian, 2004:
Seafloor Topography and Ocean Circulation
Oceanography 17

Kara, A. B., H. E. Hurlburt, P. A. Rochford, and J. J. O'Brien, 2004:
The impact of water turbidity on interannual sea surface temperature simulations in a layered global ocean model.
Journal of Physical Oceanography, 34, 345-359.

Keen, T. R., S. J. Bentley, W. C. Vaughan, and C. A. Blain, 2004:
The generation and preservation of multiple hurricane beds in the northern Gulf of Mexico.
Marine Geology, 210, 79-105.

Keen, T. R., R. W. Gould, J. F. Cayula, W. E. McBride, J. P. Blaha, and C. Rowley, 2004:
A simple method of deriving three-dimensional temperature fields using remotely sensed and in situ data for application to numerical hydrodynamic models of estuaries and bays.
Journal of Atmospheric and Oceanic Technology, 21, 1044-1058.

Narayanan, C., C. N. Rama Rao and J. M. Kaihatu, 2004:
Model parameterization and experimental design issues in nearshore bathymetry inversion
Journal of Geophysical Research 109

Stavan, R. H. and T. R. Keen, 2004:
Suspended minerogenic particle distributions in high-energy coastal environments: Optical Implications
Journal of Geophysical Research 109

Whitehouse, B. G., P. Hines, D. Ellis, and C. N. Barron, 2004:
Rapid environmental assessment within NATO.
Sea Technology, 45, 10-14.

Whitmer, K. R., G. A. Jacobs and O. M. Smedstad, 2004:
Altimeter Signal-to-Noise for Deep Ocean Processes in Operational Systems
Marine Geodesy 27 433-451

Van Woert, M. L., C. Z. Zou, W. N. Meier, P. D. Hovey, R. H. Preller and P. G. Posey 2004:
Forecast Verification of the Polar Ice Prediction Systems (PIPS) Sea Ice Concentration Fields
Journal of Atmospheric and Oceanic Technology 21 944-957


2003

Blain, C. A., and M. Cobb 2003:
Application of a Shelf-Scale Model to Wave Induced Cirulation: Alondshore Currents on Plane and Barred Beaches
NRL Tech Report NRL/FR/7322-03010-10055

Barron, C. N., R. C. Rhodes, L. F. Smedstad, C. Rowley, P. J. Martin and A. B. Kara, 2003:
Global Ocean Nowcast and Forecasts with the Navy Coastal Ocean Model (NCOM)
NRL Review 2003 175-178

Boebel, O., C. N. Barron, 2003:
A Comparison of in-situ Float Velocities with Altimeter Derived Geostrophic Velocities
Deep Sea Research II 50 119-139

Boebel, O., T. Rossby, J. Lutjeharms, W. Zenk and C. N. Barron, 2003:
Path and Variability of the Agulhas Return Current
Deep-Sea Research II 50 35-56

Boebel, O., J. Lutjeharms, C. Schmid, W. Zenk, T Rossby and C. N. Barron, 2003:
The Cape Cauldron: a regime of turbulent inter-ocean exchange
Deep-Sea Research II 50, 57-86

Chin-Bing, S. A., A. Warn-Varnas, D. B. King, K. G. Lamb, M. Teixeira and J. A. Hawkins, 2003:
Analysis of coupled oceanographic and acoustic soliton simulations in the Yellow Sea: a search for soliton-induced resonances
Mathematics and Computers in Simulation 62, 11-20

Cobb, M. and C. A. Blain 2003:
Application of Shelf-Scale Model to Wave-Induced Circulation: Rip Current
NRL Tech Report NRL/FR/7322-03-10055

Jacobs, G. A. and H. W. Ngodock, 2003:
The Maintenance of Conservative Physical Laws within Data Assimilation Systems
Monthly Weather Review 131 2595-2607

Kaihatu, J. M., 2003:
Frequency Domain Wave Models in the Nearshore and Surf Zones
Advances in Coastal Modeling Chapter 2, 43-72

Kara, A. B., P. A. Rochford and H. E. Hurlburt, 2003:
Mixed layer depth variability over the global ocean.
Journal of Geophysical Research-Oceans, 108, 15.

Kara, A. B., A. J. Wallcraft, and H. E. Hurlburt, 2003:
Climatological SST and MLD predictions from a global layered ocean model with an embedded mixed layer.
Journal of Atmospheric and Oceanic Technology, 20, 1616-1632.

Ko, D. S., R. H. Preller and G. A. Jacobs, 2003:
Transport Reversals at Taiwan Strait during October and November 1999
Journal of Geophysical Research 108

Melsom, A., E. J. Metzger, and H. E. Hurlburt, 2003:
Impact of remote oceanic forcing on Gulf of Alaska sea levels and mesoscale circulation.
Journal of Geophysical Research-Oceans, 108, 16.

Metzger, E. J., 2003:
Upper ocean sensitivity to wind forcing in the South China Sea.
Journal of Oceanography, 59, 783-798.

Morey, S. L., P. J. Martin, J. J. O'Brien, A. J. Wallcraft and J. Z. Hidalgo, 2003:
Export pathways for river discharged fresh water in the northern Gulf of Mexico
Journal of Geophysical Research 108

Rhodes, R. C., H. E. Hurlburt, A. J. Wallcraft, E. J. Metzger, J. F. Shriver, O. M. Smedstad, J. F. Cayula and A. B. Kara, 2003:
Validation Test Report for the 1/16° Global NRL Layered Ocean Model Nowcast/Forecast System
NRL Tech Report NRL/FR/7320-03-10029

Rogers, W. E., P. A. Hwang, and D. W. Wang, 2003:
Investigation of Wave Growth and Decay in the SWAN Model: Three Regional-Scale Applications
Journal of Physical Oceanography 33 366-367

Schmid, C., O. Boebel, W. Zenk, J. R. E. Lutjeharms, S. L. Garzoli, P. L. Richardson, and C. N. Barron, 2003:
Early Evolution of an Agulhas Ring
Deep-Sea Research II 50 141-166

Smedstad, O. M., H. E. Hurlburt, E. J. Metzger, R. C. Rhodes, J. F. Shriver, A. J. Wallcraft, and A. B. Kara, 2003:
An operational Eddy resolving 1/16 degrees global ocean nowcast/forecast system.
Journal of Marine Systems, 40, 341-361.

Teague, W. J., G. A. Jacobs, D. S. Ko, T. Y. Tang, K. I. Chang and M. S. Suk, 2003:
Connectivity of the Taiwan, Cheju, and Korea Straits
Continental Shelf Research 23 63-77

Wallcraft, A. J., A. B. Kara, H. E. Hurlburt, and P. A. Rochford, 2003:
The NRL Layered Global Ocean Model (NLOM) with an embedded mixed layer submodel: Formulation and tuning.
Journal of Atmospheric and Oceanic Technology, 20, 1601-1615.

Warn-Varnas, A. C., S. A. Chin-Bing, D. B. King and Z. Hallock ,and J. A. Hawkins, 2003:
Ocean Acoustic Solitary Wave Studies and Predictions
Surves in Geophysics 24, 39-79


2002

Bentley, S. J., T. R. Keen, C. A. Blain, and W. C. Vaughan, 2002:
The origin and preservation of a major hurricane event bed in the northern Gulf of Mexico: Hurricane Camille, 1969.
Marine Geology, 186, 423-446.

Allard, R., W. E. Rogers, S. N. Carrol and K. V. Rushing, 2002:
Software Design Description for the Simulating Waves Nearshore Model (SWAN)
NRL Tech Report NRL/MR/7320--02-8285

Allard, R., J. Christiansen, T. Taxon, S. Williams and D. Wakeham, 2002:
The Distributed Integrated Ocean Prediction System (DIOPS)
MTS Proceedings

Allard, R. A., J. M. Kaihatu, Y. L. Hsu and J. D. Dykes, 2002:
The Integrated Ocean Prediction System (IOPS)
Oceanography 15 67-76

Barron, C. N. and L F. Smedstad, 2002:
Global River Inflow within the Navy Coastal Ocean Model
Proceedings MTS/IEEE Oceans 2002 Conference

Bentley, S. J., T. R. Keen, C. A. Blain and W. C. Vaughan, 2002:
The Origin and Preservation of a major hurricane bed in the northern Gulf of Mexico: Hurricane Camille, 1969
Marine Geology 186 423-446

Blain, C. A. and C. R. Edwards, 2002:
Development of a Forecast Capability for Coastal Embayments of the Mississippi Sound
Proceedings MTS/IEEE Oceans 2002 Conference

Blain, C. A., R. H. Preller and A. P. Rivera, 2002:
Tidal Prediction Using the Advanced Circulation Model (ADCIRC) and Relocatable PC-based System
Oceanography 15 77-87

Campbell, T., J. Cazes and W. E. Rogers, 2002:
Implementation of an Important Wave Model on Parallel Architectures
Proceeding MTS/IEEE Oceans 2002 Conference, 1234-1239

Collins, M J., D. R. DelBazo and C. N. Barron, 2002:
MASDA-MODAS Adaptive Sampling Decision Aid
Proceedings MTS/IEEE Oceans 2002 Conference, 775-780

Edwards, C. R. and C. A. Blain, 2002:
Operational Evaluation of ADCIRC-2DDI as Applied to the Western North Atlantic Ocean
NRL Tech Report NRL/FR/7320-01-10005

Fox, D. N., C. N. Barron, M. R. Carnes, M. Booda, G. Peggion and J. V. Gurley, 2002:
The Modular Ocean Data Assimilation System
Oceanography 15 22-28

Fox, D. N., W. J. Teague, C. N. Barron, M. R. Carnes, and C. M. Lee, 2002:
The Modular Ocean Data Assimilation System (MODAS).
Journal of Atmospheric and Oceanic Technology, 19, 240-252.

Hurlburt, H. E., M. J. Bell, G. Evensen, C.N. Barron, A. Hines, O. M. Smedstad and D. Storkey, 2002:
Operational Global Ocean Prediction Systems
En route to GODAE Proceedings 97-105

Jacobs, G. A., C. N. Barron, D. N. Fox, K. R. Whitmer, S. Klingenber, D. May and J. P. Blaha, 2002:
Operational altimeter sea level products
Oceanography 15 13-21

Johns, W. E., T. L. Townsend, D. M. Fratontoni and W. D. Wilson, 2002:
On the Atlantic inflow to the Caribbean Sea
Deep-Sea Research I 49 211-243

Kara, A. B., P. A. Rochford and H. E. Hurlburt, 2002:
Air-sea flux estimates and the 1997-1998 ENSO event.
Boundary-Layer Meteorology, 103, 439-458.

Peggion, G., D. N. Fox and C. N. Barron, 2002:
A Rapidly Relocatable System: Operational Implementations and Validations
Proceedings MTS/IEEE Oceans 2002 Conference, 841-846

Rhodes, R. C., H. E. Hurlburt, A. J. Wallcraft, C. N. Barron, P. J. Marin, E. J. Metzger, J. F. Shriver, D. S. Ko, O. M. Smedstad, S. L. Cross and A. B. Kara, 2002:
Navy Real-Time Global Modeling Systems
Oceanography 15

Rogers, W. E., 2002:
The U.S. Navy's Global Wind-Wave Models: An Investigation into Sources of Errors in Low-Frequency Energy Predictions
NRL Tech Report NRL/FR/7320--02-10035

Rogers, W. E., J. M. Kaihatu, H. A. Petit, N. Booij and L. H. Holthuijsen, 2002:
Diffusion reduction in an arbitrary scale third generation wind wave model
Ocean Engineering 29 1357-1390

Rogers, W. E. and P. A. Whittmann, 2002:
Quantifying the Role of Wind Field Accuracy in the U.S. Navy's Global Ocean Wave Nowcast/Forecast System
NRL Tech Report NRL/MR/7320--02-8290

Rowley, C., C. N. Barron, L. F. Smedstad and R. C. Rhodes, 2002:
Real-Time Ocean Data Assimilation and Prediction with Global NCOM
Proceedings MTS/IEEE Oceans 2002 Conference, 781-786

Teague, W. J., G. A. Jacobs, H. T. Perkins, J. W. Book, K. I. Chang and M. S. Suk, 2002:
Low Frequency Current Observations in the Korea/Tsushima Strait
Journal of Physical Oceanography 32 1621-1641

Tilburg, C. E., H. E. Hurlburt, J. J. O'Brian and J. F. Shriver, 2002:
Remote Topographic Forcing of a Baroclinic Western Boundary Current: A Explanation for the Southland Current and the Pathway of the Subtropical Front East of New Zealand
Journal of Physical Oceanography 32 3216-3232

Wallcraft, A. J., H. E. Hurlburt, E. J. Metzger, R. C. Rhodes, J. F. Shriver, and O. M. Smedstad, 2002:
Real-time ocean modeling systems.
Computing in Science & Engineering, 4, 50-57.

Wallcraft, A. J., 2002:
A Comparison of Co-Array Fortran and Open MP Fortran for SPMD Programming
Journal of Supercomputing 22 231-250

Zamudio, L., H. E. Hurlburt, E. J. Metzger, and O. M. Smedstad, 2002:
On the evolution of coastally trapped waves generated by Hurricane Juliette along the Mexican West Coast.
Geophysical Research Letters, 29, 4.


2001

Jacobs, G. A., C. N. Barron, and R. C. Rhodes, 2001:
Mesoscale characteristics.
Journal of Geophysical Research-Oceans, 106, 19581-19595.

Jacobs, G. A., J. W. Book, H. T. Perkins and W. J. Teague, 2001:
Inertial oscillations in the Korea Strait.
Journal of Geophysical Research, 106, 26943-26957.

Jacobs, G. A., H. T. Perkins, W. J. Teague and P. J. Hogan, 2001:
Summer Transport Through the Tsushima-Korea Strait
Journal of Geophysical Research 106 C4, 6917-6929

Kaihatu, J. M.,2001:
Improvement of Parabolic Nonlinear Dispersive Wave Model
Journal of Waterway Port, Coastal and Ocean Engineering 113-121

Kara, A. B., P. A. Rochford and H. E. Hurlburt, 2001:
NRL Mixed Layer Depth (NMLD) Climatologies
NRL Tech Report NRL/FR/7330--01-9995

Metzger, E. J. and H. E. Hurlburt, 2001:
The nondeterministic nature of Kuroshio penetration and eddy shedding in the South China Sea.
Journal of Physical Oceanography, 31, 1712-1732.

Metzger, E. J. and H. E. Hurlburt, 2001:
The importance of high horizontal resolution and accurate coastline geometry in modeling South China Sea inflow.
Geophysical Research Letters, 28, 1059-1062.

Naimie, C. E., C. A. Blain, and D. R. Lynch, 2001:
Seasonal mean circulation in the Yellow Sea - a model-generated climatology.
Continental Shelf Research, 21, 667-695.

Narayanan, C. and J. M. Kaihatu, 2001:
Refinements to an Optimized Model Driven Bathymetry Deduction Algorithm
Proceedings Ocean Waves Analysis and Measurement WACWS2001 924-933

Okkonen, S. R., G. A. Jacobs, E. J. Metzger, H. E. Hurlburt, and J. F. Shriver, 2001:
Mesoscale variability in the boundary currents of the Alaska Gyre.
Continental Shelf Research, 21, 1219-1236.

Rogers, W. E. and W. C. O'Reilly, 2001:
Pacific Basin wind-wave models: The generation and decay of low frequency energy
Proceedings of the Fourth International Sysposium San Francisco CA ASCE 934-943

Smedstad, L. F. and C. A. Blain, 2001:
A Review of U.S. Navy Atmospheric Model Products in the Arabian Gulf- An Examination of NORAPS and COAMPS
NRL Tech Report NRL/FR/7320-0109978

Teague, W. J., H. T. Perkins, G. A. Jacobs and J. W. Book, 2001:
Tide Observations in the Korea-Tsushima Strait
Continental Shelf Research 21 545-561

Tilburg, C. E., H. E. Hurlburt, J. J. O'Brian and J. F. Shriver, 2001:
The Dynamics of the East Australian Current System: The Sasman Front, the East Auckland Current and the East Cape Current
Journal of Physical Oceanography 31 2917-2942


2000

Hogan, P. J. and H. E. Hurlburt, 2000:
Impact of Upper-Topographical Coupling and Isopycnal Outcropping in Japan/East Sea Model with 1/8° to 1/64° Resolution
Journal of Physical Oceanography 30 2535-2561

Hurlburt, H. E. and P. J. Hogan, 2000:
Impact of 1/8° to 1/64° Resolution on Gulf Stream Model-Data Comparisons Basin-scale Subtropical Atlantic Ocean Models
Dynamics of Atmospheric and Oceans 32 283-329

Jacobs, G. A., H. B. Hur and S. K. Riedlinger, 2000:
Yellow and East China Seas Response to Winds and Currents
Journal of Geophysical Research 105 C9, 21947-21968

Kara, A. B., P. A. Rochford, and H. E. Hurlburt, 2000:
Efficient and accurate bulk parameterizations of air-sea fluxes for use in general circulation models.
Journal of Atmospheric and Oceanic Technology, 17, 1421-1438.

Kara, A. B., P. A. Rochford, and H. E. Hurlburt, 2000:
Mixed layer depth variability and barrier layer formation over the North Pacific Ocean.
Journal of Geophysical Research-Oceans, 105, 16783-16801.

Kara, A. B., P. A. Rochford, and H. E. Hurlburt, 2000:
An optimal definition for ocean mixed layer depth.
Journal of Geophysical Research-Oceans, 105, 16803-16821.

Keen, T. R., 2000:
The Generation of internal Waves on the Continental Shelf by Hurricane Andrew
Journal of Geophysical Research 105 C11, 26203-26224

Metzger, E. J. and H. E. Hurlburt, 2000:
The nondeterministic Nature of Kuroshio Penetration and Eddy Shedding in the South China Sea
Journal of Physical Oceanography 31 1712-1732

Narayanam, C. and J. M. Kaihatu, 2000:
Use of Phase-Resolving Wave Models in Bathymetry Dedution
Coastal Engineering 495-504

Perkins, H., W. J. Teague, G. A. Jacobs, K. I. Chang and M. S. Suk, 2000:
Currents in Korea-Tsushima Strait During Summer 1999
Geophysical Research Letters 27 19, 3033-3036

Riedlinger, S. K. and G. A. Jacobs, 2000:
Study of the Dynamics of Wind Driven Transports into the Yellow Sea during winter
Journal of Geophysical Research 105 C12, 28695-28708

Rogers, W. E., P. A. Hwang, D. W. Wang and J. M. Kaihatu, 2000:
Analysis of SWAN Model with In-situ and remotely sensed data from SandyDuck '97
Proceedings 27th ICCE

Rogers, W. E., P. A. Hwang, J. M. Kaihatu and D. W. Wang, 2000:
Modeling Bimodal Wind-Wave Propagation Resonance
6th International Workshop on Wave Hindcasting and Forecasting

Shriver, J. F. and H. E. Hurlburt, 2000:
The Effect of Upper Ocean Eddies on the Non-Steric Constribution of the Bartropic Mode
Geophysical Research Letters 27 17, 2713-2716

Stammer, D., C. N. Barron, P. J. Hogan, H. E. Hurlburt, G. A. Jacobs, O. M. Smedstad, R. C. Rhodes and A. J. Wallcraft, 2000:
Ocean State Estimation in Support of Oceanographic Research
Oceanography 13 51-56

Teague, W. J. and G. A. Jacobs,2000:
Current observations on the development of the Yellow Sea Warm Current
Journal of Geophysical Research, 105 C2

Teague, W. J., P. Pistek, G. A. Jacobs and H. T. Perkins, 2000:
Evaluation of Tides from TOPEX/Poseidon in the Bohai and Yellow Seas
Journal of Atmospheric and Oceanic Technology 17 5, 679-687

Townsend, T. L., H. E. Hurlburt and P. J. Hogan, 2000:
Modeled Sverdrup Flow in the North Atlantic from 11 Different Wind Stress Climatologies
Dynamics of Atmospheric and Oceans 32 373-417